View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_high_18 (Length: 209)
Name: NF12196_high_18
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 18002325 - 18002496
Alignment:
| Q |
19 |
aatgtatttctttacattgttacatatggataagatgacaacaacttacaagcctggtacatcacgtaagaaacaaaac----tatccacgagacctcta |
114 |
Q |
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| T |
18002325 |
aatgtatttcttttcattgatacatatggataagatgacaacaacttacaagcctggtacatcacgtaagaaacaaaactatatatccacgaaacctcta |
18002424 |
T |
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| Q |
115 |
ttaaaattgaaagtgtatttgtcatctcattcgattcaagcctcttgtgtaaacataacatactttattttgttttc |
191 |
Q |
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| T |
18002425 |
ttaaaattgaaagtgtatttgtcatctc-----attcaagcctcttgtgtaaacataacatactttattttgttttc |
18002496 |
T |
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