View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_high_2 (Length: 609)
Name: NF12196_high_2
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 5353270 - 5352690
Alignment:
| Q |
18 |
agcacaaacattccaaagaattttcttattttggcaatgtcaagagcttttttgaaagagaatatttatatagcaatatgtacattagttaggactatct |
117 |
Q |
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| T |
5353270 |
agcacaaacattccaaagaattttcttattttggcaatgtcaagagcttttttgaaagagaatatttatatagcaatatgtacattagttaggactatct |
5353171 |
T |
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| Q |
118 |
gtgcagctgtttctcctttattcgtatatgcttttgtaaaccacgcgagctgcgaatgcgacgaagaagagtatttttatgaaggtgttactttattagg |
217 |
Q |
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| T |
5353170 |
gtgcagctgtttctcctttattcgtatatgcttttgtaaaccacgcgagctgcgaatgcgacgaagaagagtatttttatgaaggtgttactttattagg |
5353071 |
T |
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| Q |
218 |
gtgccttgtgttggtcaaattagttgagtcagtaactgaaagacagtggtactttgaatcaaggagggcaggaatgagaatgagatcctctttgatggtt |
317 |
Q |
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| T |
5353070 |
gtgccttgtgttggtcaaattagttgagtcagtaactgaaagacagtggtactttgaatcaaggagggcaggaatgagaatgagatcctctttaatggtt |
5352971 |
T |
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| Q |
318 |
gcagtgtatgaaaagctattgaacctttcgagttttggaaggaaaaggcactcaaatggtgaaatcgtgactttcatagctgttgatgcatacagaatgg |
417 |
Q |
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| T |
5352970 |
gcagtgtatgaaaagctattgaacctttcgagttttggaaggaaaaggcactcaaatggtgaaatcgtgaatttcatagctgttgatgcatacagaatgg |
5352871 |
T |
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| Q |
418 |
gagagtttttgtactggtttcattcaggatggagttttgtgttgcaacttttgttatctatttgtgtacttttttggattgttggtcttagtgcaattcc |
517 |
Q |
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| T |
5352870 |
gagagtttttgtactggtttcattcaggatggagttttgtgttgcaacttttgttatctatttgtgtacttttttggattgttggtcttagtgcaattcc |
5352771 |
T |
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| Q |
518 |
tggtttgattcttcttgtcatatttggagtctttttcaatgttccatatgcaaagaaaataaaaagttgcaagtcacaggt |
598 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
5352770 |
tggattgattcttcttgtcatatttggagtctttttcaatattccatatgcaaagaagataaaaagttgcaagtcacaggt |
5352690 |
T |
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