View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_high_3 (Length: 510)
Name: NF12196_high_3
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 23634892 - 23635385
Alignment:
| Q |
19 |
attcagcctaaacttcgctttggtacaattgagatcttactctcagctacaactacactacaccctctggtcactataataagcacgaaaaacaaaactg |
118 |
Q |
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| T |
23634892 |
attcagcctaaacttcgctttggtacaattgagatcttactctcagctacaactacactccaccctctggtcactataataagcacaaaaaacaaaactg |
23634991 |
T |
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| Q |
119 |
gt--atttggtcaatgacaagatacatcagtttttcaatgaacctaataaatgacgttttgcttatgttagtgaccgaatggtgtatacacggtcaaaaa |
216 |
Q |
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| T |
23634992 |
gtgtatttggtcaatgaccagatacatcagtttttcaatgaacctaataaatgacgttttgcttatattagtgaccgaatggtgtatacacggtcaaaaa |
23635091 |
T |
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| Q |
217 |
tgtgtccgtggctaccaaatataaaatccaacaccacaaaatttcctaccatgaatataactaaagtgatgggtatcatatatgatggaaaatgctgtct |
316 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23635092 |
tgtgcctgtggctaccaaatataaaatccaacaccacaaaatttcctaccatgaatataactaaagtgatgggtatcatatatgatggaaaatgctgtct |
23635191 |
T |
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| Q |
317 |
actaacgactttgatagctggaaagaggggacttcagtgtctcgtaagtcataaaaacaataccgacgccgggaacaaccttgtagtactcgggcaaaat |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23635192 |
actaacgactttgatagctggaaagaagggacttcagtgtctcgtaagtcataaaaacaataccgacgccgggaacaaccttgtagtactcgggcaaaat |
23635291 |
T |
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| Q |
417 |
gcctctatacaaacctcgtatcccttcattacgaaatatgtgaccaaatgtcccgaacaaactggtgttatagacacgtgctcgaccaccaacc |
510 |
Q |
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| T |
23635292 |
gcctctatacaaacctcgtatcccttcattacgaaatatgtgaccaaatgtcccgaacaaactggtgttatagacacgtgctcgaccaccaacc |
23635385 |
T |
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