View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12196_high_4 (Length: 498)
Name: NF12196_high_4
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 23 - 482
Target Start/End: Original strand, 36311844 - 36312303
Alignment:
| Q |
23 |
aactccttcaagcttcacagtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaag |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311844 |
aactccttctagcttcacagtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaag |
36311943 |
T |
|
| Q |
123 |
taatccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctcca |
222 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36311944 |
tactccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctcca |
36312043 |
T |
|
| Q |
223 |
cagctctacgagtagcaacctgcaactggtaatagtttgcagagtggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaac |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36312044 |
cagctctacgagtagcaacctgcaactggtaatagtttgcagagtggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaac |
36312143 |
T |
|
| Q |
323 |
aaaattagttggcatatgagaaatgcccttcacttttctctgaagtaatgttagaaaagcagttcttggcatgaaatttggaagaccaattaacttagct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36312144 |
aaaattagttggcatatgagaaatgcccttcacttttctctgaagtaatgttagaaaagcagttcttggcatgaaatttggaagaccaattaacttagct |
36312243 |
T |
|
| Q |
423 |
tcctcaaggactacaatctcttccattaggaaatcctttgcagaatcaatttcagcacag |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36312244 |
tcctcaaggactacaatctcttccattaggaaatcctttgtagaatcaatttcagcacag |
36312303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 27 - 460
Target Start/End: Original strand, 36304308 - 36304741
Alignment:
| Q |
27 |
ccttcaagcttcacagtacttgaacatcgatcatcatccaaaacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaat |
126 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||| ||| |||| ||||||||| ||||| ||||||||||||||| |||||| ||||||||||| | |
|
|
| T |
36304308 |
ccttccagcttcacagtacttgaagctcgatcaacattcaatacttctttcaaaaacacttctcgatgagacatcagcttgttatactcctgcaagtact |
36304407 |
T |
|
| Q |
127 |
ccggattacaagtgtaatccgtgtgcttctccatatcaacagcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagc |
226 |
Q |
| |
|
| || |||| ||||| || || |||||||||| ||||||||||| | |||||| ||||||||||| | |||||||||| |||| ||||| |||| |
|
|
| T |
36304408 |
cagggttacccgtgtagtctgtaagcttctccatctcaacagcttgaagcacatgctgaatggaattctttttcttcttagagataaggtgctcagcagc |
36304507 |
T |
|
| Q |
227 |
tctacgagtagcaacctgcaactggtaatagtttgcagagtggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaacaaaa |
326 |
Q |
| |
|
||||||| | | |||||| | ||| |||||||| ||||| || ||||||| ||||| | ||||| |||||| ||| |||| ||| | ||||||||| |
|
|
| T |
36304508 |
tctacgaattgaaacctgaagctgataatagttagcagaatgacgattcaaaaccgaaactacaacagtttccagataattccatacactttcaacaaaa |
36304607 |
T |
|
| Q |
327 |
ttagttggcatatgagaaatgcccttcacttttctctgaagtaatgttagaaaagcagttcttggcatgaaatttggaagaccaattaacttagcttcct |
426 |
Q |
| |
|
||| ||||||||| |||||||||| | |||||| |||||||||| || | |||||||||||||||||||||||| ||||||||||| || || ||||||| |
|
|
| T |
36304608 |
ttaattggcatataagaaatgcccctaacttttttctgaagtaaagtcaaaaaagcagttcttggcatgaaattcggaagaccaatgaatttggcttcct |
36304707 |
T |
|
| Q |
427 |
caaggactacaatctcttccattaggaaatcctt |
460 |
Q |
| |
|
|||| ||| ||||| ||||| ||||||||||| |
|
|
| T |
36304708 |
caagaactttgatctcctccatgaggaaatcctt |
36304741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 412
Target Start/End: Original strand, 36289406 - 36289750
Alignment:
| Q |
68 |
aacttttttcaaaaatgcttcttgatgagacatcagctcgttatattcctgcaagtaatccggattacaagtgtaatccgtgtgcttctccatatcaaca |
167 |
Q |
| |
|
||||| ||||| ||||| |||||| |||| |||||| ||||| ||| |||| || || ||||||||||||||||| || | || ||||| || ||| |
|
|
| T |
36289406 |
aacttctttcacaaatgattcttgttgagctatcagcctattatactccagcaaatactcaggattacaagtgtaatctgtcagtttttccatctcgaca |
36289505 |
T |
|
| Q |
168 |
gcttgcatcacatgttgaatggaattgctcttcttcttagcaataacatgctccacagctctacgagtagcaacctgcaactggtaatagtttgcagagt |
267 |
Q |
| |
|
|||| |||||||||||| | ||| |||||||||||||||| | | ||| | ||||| ||||| | |||||| | ||| ||||| |||| ||| | |
|
|
| T |
36289506 |
gcttccatcacatgttggactgaacatttcttcttcttagcaatcaatttctcgcctgctctgcgagtggaaacctgaagctgataataatttgaagaat |
36289605 |
T |
|
| Q |
268 |
ggcgattcatgaccgagataacaaccctttccaaatagctccacacattgtcaacaaaattagttggcatatgagaaatgcccttcacttttctctgaag |
367 |
Q |
| |
|
| |||||| | || || ||||| ||| | |||| |||| ||||| || ||||| ||| |||||||| |||||||||||| ||||||||||| || |
|
|
| T |
36289606 |
gatgattcaaaatagaaatcacaactgattcaagatagttccaaacattatccacaaagttaactggcatataagaaatgcccttaacttttctctgcag |
36289705 |
T |
|
| Q |
368 |
taatgttagaaaagcagttcttggcatgaaatttggaagaccaat |
412 |
Q |
| |
|
|| ||| | ||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
36289706 |
tattgtcaaaaatgcagttcttggcatgaagtttggtagaccaat |
36289750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University