View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_high_6 (Length: 455)
Name: NF12196_high_6
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 5604350 - 5603915
Alignment:
| Q |
17 |
tattgaactttattgatgttactagttaatatccacttaaacttaacttcaagtgcttaacaatgatgtaatatcgtcacaagaattaagctgaaataag |
116 |
Q |
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| T |
5604350 |
tattgaactttattgatgttactagttaatatccacttaaacttaacttcaagtgcttaacaatgatgtaatatcgtcacaagaattaagctgaaataag |
5604251 |
T |
|
| Q |
117 |
cagtttgaaaaaagggccacgttgtggttgcttcgtttgcatctgaggcaacgttcggatgacaggaatccaatgaatgaagagttaggttgaaaaagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604250 |
cagtttgaaaaaagggccacgttgtggttgcttcgtttgcatctgaggcaacgttcggatgacaggaatccaatgaatgaagagttaggttgaaaaagaa |
5604151 |
T |
|
| Q |
217 |
acttgaaatttagatattatgtccccacccttgtacagttattaattcttccttctacttaaaggtgccaagaaatattagatatataacaataggattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5604150 |
acttgaaatttagatattatgtccccacccttgtacagttattaattcttccttctacttaaaggtgccaagaaatattagatatataacaataggtttt |
5604051 |
T |
|
| Q |
317 |
gtgaacaagtaaaatagtttagcgtgnnnnnnnacgattgaatcaataaatatctatttaatttaataatgagtttattgatcccatgataaaagctaac |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604050 |
gtgaacaagtaaaatagtttagcgtgtttttttacgattgaatcaataaatatctatttaatttaataatgagtttattgatcccatgataaaagctaac |
5603951 |
T |
|
| Q |
417 |
tgatgtgtgatgcaaaacttattttatctgtgctcc |
452 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
5603950 |
tgatgtgtgatgcaaaacttactttatctgtgctcc |
5603915 |
T |
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