View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_high_9 (Length: 392)
Name: NF12196_high_9
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 5441054 - 5441422
Alignment:
| Q |
10 |
aacctgtgctatggtgtataaattcttgaatgaagcactgacattctctccattcttctctaaacatgagtgttcctctatataaccctttatcttgctc |
109 |
Q |
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| T |
5441054 |
aacctgtactatggtgtataaattcttgaatgaagcactgacattctctccattcttctctaaacatgagtgttcctctatataaccctttatcttgctc |
5441153 |
T |
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| Q |
110 |
tcattagaatcaccatttacactgtctagaaaagacaggtcttggtttttcttgccaagagtcaattccaatagtttcttatgtatacggnnnnnnncac |
209 |
Q |
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| T |
5441154 |
tcattagaagcaccatttacactgtctagaaaagaaaggtcttggtttctcttgccaagagtcaattccaatagtttcttatgtatacggtttttttcac |
5441253 |
T |
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| Q |
210 |
cttcgtttattaccttcttcttaattgtgtgggtacacactggttgagcgatatgatctagaaaacaagtaatatcaattcatttttatcattacttgaa |
309 |
Q |
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| T |
5441254 |
cttcgt---ttaccttcttcttaattgggtgggtacgcactggttgagcgagacgatctagaaaacaagtaatatcaattcatttttatcattacttgaa |
5441350 |
T |
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| Q |
310 |
tcagtaaaatgcgtggttcatgtatttctaatgctttacctttctttaaagttttacatgatgtaagtgatg |
381 |
Q |
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| T |
5441351 |
tcagtaaaatgcgtggttcatgtatttctaatgctttacctttctttaaagttttacatgatgtaagagatg |
5441422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 3856805 - 3856613
Alignment:
| Q |
10 |
aacctgtgctatggtgtataaattcttgaatgaagcact-gac--attctctccattcttctctaaacatgagtgttcctctatataaccctttatcttg |
106 |
Q |
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| T |
3856805 |
aacctgtattatggtgtataaattcttgaatgaagcactagaattattatcttcgtttttgtctaaatctggtggtgcctctatataaccctttatcttt |
3856706 |
T |
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| Q |
107 |
ctctcattagaatcaccatttacactgtctagaaaagacaggtcttggtttttcttgccaagagtcaattccaatagtttcttatgtatacgg |
199 |
Q |
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| T |
3856705 |
ttctcatcagaaacgccatttatattgtctagaaatgagaggtcttggtttttcttgccaagagccaatttcaatagtttcttatgtatacgg |
3856613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 3865562 - 3865370
Alignment:
| Q |
10 |
aacctgtgctatggtgtataaattcttgaatgaagcact-gac--attctctccattcttctctaaacatgagtgttcctctatataaccctttatcttg |
106 |
Q |
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| T |
3865562 |
aacctgtattatggtgtataaattcttgaatgaagcactagaattattatcttcgtttttgtctaaatctggtggtgcctctatataaccctttatcttt |
3865463 |
T |
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| Q |
107 |
ctctcattagaatcaccatttacactgtctagaaaagacaggtcttggtttttcttgccaagagtcaattccaatagtttcttatgtatacgg |
199 |
Q |
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| T |
3865462 |
ttctcatcagaaacgccatttatattgtctagaaatgagaggtcttggtttttcttgccaagagccaatttcaatagtttcttatgtatacgg |
3865370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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