View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12196_low_1 (Length: 714)
Name: NF12196_low_1
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_low_1 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
| [»] scaffold0111 (3 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 590; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 10 - 704
Target Start/End: Original strand, 20951427 - 20952121
Alignment:
| Q |
10 |
agaacctgtgcaaccagtgttggagttagttgatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20951427 |
agaacctgtgcaaccagtgttggagttagttgatgatgtgaacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttg |
20951526 |
T |
|
| Q |
110 |
gagattccccggattcgtaatgcacatgagacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctg |
209 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20951527 |
gagattctccggattcagaatgcacatgagacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctg |
20951626 |
T |
|
| Q |
210 |
ctagggagatgttaccaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttgga |
309 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20951627 |
ctagggagatgtcaccaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcccgga |
20951726 |
T |
|
| Q |
310 |
cgacactgccacttttttagagatggagtgtattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgact |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
20951727 |
cgacactgccacttttttagagatggagcgtattgctcagaatgccaattacacagttgagcatatagggactgatgaaaatggagacagaattttgact |
20951826 |
T |
|
| Q |
410 |
gtttttgaacaacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactc |
509 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
20951827 |
gtttttgaaccacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaaaccaacgcggagttacccttcactc |
20951926 |
T |
|
| Q |
510 |
tggttctttctgagtaacaaaagcagcaagttagaaagcagcttcagattggcaagccaccgccatataaaacccgctcttaaggaggatcaaattcaag |
609 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
20951927 |
tggttctttctaagtaacaaaagcaacaagttagaaagcaacttcagattggcaagccaccgccatataaaacccgctctcaaggaggatcaaattcagg |
20952026 |
T |
|
| Q |
610 |
tgaccaatgaactatcttggaatgttcgcggtttcggcacttctgacaccaaaatcnnnnnnnggcggagccaatggtatcacttgcacaggttc |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20952027 |
tgaccaatgaactatcttggaatgttcgcggtttcggcacttctgacaccaaaatctctttttggcggagccaatggtatcacttgcacaggttc |
20952121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 10288146 - 10288061
Alignment:
| Q |
40 |
tgatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccggattc |
125 |
Q |
| |
|
||||||| |||||| || | |||||||||||||||||||||| || || | ||| || |||||||||||| ||| |||| ||||| |
|
|
| T |
10288146 |
tgatgatttgcacgctgtcatgctttcggatgatgtggaacaagtaaaatttgaatcatgggaggagttggtgataccccagattc |
10288061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 23 - 557
Target Start/End: Original strand, 29042239 - 29042773
Alignment:
| Q |
23 |
ccagtgttggagttagttgatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccgga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
29042239 |
ccagtgttggagttagttgatgatgtgcacaatgacgtgctttcggatgatgtggaacatgttaattcggaaccacgggaggagttggagattccccgaa |
29042338 |
T |
|
| Q |
123 |
ttcgtaatgcacatgagacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctagggagatgtt |
222 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29042339 |
ttcagaatgcacatgagacaaatccatcctcggatgcccatgtttatgaacattctttgactgttgatttggaggcctccgcttctgctagggagatgtc |
29042438 |
T |
|
| Q |
223 |
accaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacactgccact |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||| |||||| |||| |||||||||| |
|
|
| T |
29042439 |
accaactcaacttgatattgatgatgcgcacgatgacgtgcaatctagtccccacgacggcccttttgttgtcagatccatcccggacatcactgccact |
29042538 |
T |
|
| Q |
323 |
tttttagagatggagtgtattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgtttttgaacaac |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||| ||||||||||||||||||||| || |
|
|
| T |
29042539 |
tttttagagatggagcgtattgctcagaatgccaattacacggttgagcatacaggaactgatgaaaatagagaccaaattttgactgtttttgaaccac |
29042638 |
T |
|
| Q |
423 |
atagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactctggttctttctga |
522 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||| |||||||| | | |
|
|
| T |
29042639 |
ataacaatccgaatgttcaacatgacttcgatctttggatgcgtgtctgtgaatatgacaaagccaatgcagatttacccttcactccggttctttgtaa |
29042738 |
T |
|
| Q |
523 |
gtaacaaaagcagcaagttagaaagcagcttcaga |
557 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29042739 |
gaaacaaaagcagcaagttagaaagcagcttcaga |
29042773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 223 - 432
Target Start/End: Complemental strand, 40265580 - 40265371
Alignment:
| Q |
223 |
accaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacactgccact |
322 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
40265580 |
accaactcaatttaatattgatgatgtgcatgatgacgtgcaatctagtccccacgatggccctcttgttgtcagatccatcccggacgacactgccact |
40265481 |
T |
|
| Q |
323 |
tttttagagatggagtgtattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgtttttgaacaac |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40265480 |
tttttagagatggagcgtattgctcagaatgccaattacacggttgagcatacatggaatgatgaaaatggagacagaattttgactgtttttgaaccac |
40265381 |
T |
|
| Q |
423 |
atagcaatct |
432 |
Q |
| |
|
|||||||||| |
|
|
| T |
40265380 |
atagcaatct |
40265371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 434 - 612
Target Start/End: Complemental strand, 40264270 - 40264092
Alignment:
| Q |
434 |
aatgttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactctggttctttctgagtaacaaaagc |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||| || ||||||||| |
|
|
| T |
40264270 |
aatgttcaacatgacttggatctttggatgcgtgtccgtgaatatgacaaagtcaacgcggagttacccttcactccggttctttctaagaaacaaaagc |
40264171 |
T |
|
| Q |
534 |
agcaagttagaaagcagcttcagattggcaagccaccgccatataaaacccgctcttaaggaggatcaaattcaagtga |
612 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| | | ||||||||||||| |||| |
|
|
| T |
40264170 |
agcaagttaaaaagcagctttagattagcaagccaccgccatataaaacccgctctcaggcaggatcaaattcaggtga |
40264092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 609 - 704
Target Start/End: Original strand, 29042779 - 29042874
Alignment:
| Q |
609 |
gtgaccaatgaactatcttggaatgttcgcggtttcggcacttctgacaccaaaatcnnnnnnnggcggagccaatggtatcacttgcacaggttc |
704 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
29042779 |
gtgaccaatgaactatctttgaatgttcgcggtttcggtacttccgacaccaaaatcaatttttggcggagccaatggtatcacttgcacatgttc |
29042874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 28975464 - 28975406
Alignment:
| Q |
389 |
aatggagacaaaattttgactgtttttgaacaacatagcaatctgaatgttcaacatga |
447 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||| |||||| || ||||| |
|
|
| T |
28975464 |
aatggtgacaaaattttgactgtttatgaaccacatagcaatccgaatgtgcagcatga |
28975406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 13330398 - 13330320
Alignment:
| Q |
47 |
gtgcacgatgacgtgctttcggatgatgtggaacatgttaattcaga-accacgggaggagttggagattccccggattc |
125 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||| || || | ||||||||||||||||||||||||||| |
|
|
| T |
13330398 |
gtgcacgatgacgtgctttcggatgttgaggaacatg-taagtccgataatttgggaggagttggagattccccggattc |
13330320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 28975328 - 28975279
Alignment:
| Q |
551 |
cttcagattggcaagccaccgccatataaaacccgctcttaaggaggatc |
600 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |||| | |||||||| |
|
|
| T |
28975328 |
cttcagattggtaagccaccgccttataaaacccactctcagggaggatc |
28975279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 128 - 612
Target Start/End: Original strand, 8982966 - 8983450
Alignment:
| Q |
128 |
aatgcacatgagacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaa |
227 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
8982966 |
aatgcacatgagacacatccatcctcggatgcccttgtttatgagcattctttaactgttgatttggaggcctccgcttctactagggagatgtcaccaa |
8983065 |
T |
|
| Q |
228 |
ctcaacttgatattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacactgccactttttt |
327 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
8983066 |
ctcaacttaatattgatgatgtgcacgataacgtgcaatctagtccccacgatggcccccttgttgtcagatccatcccggacgacactgccactttttt |
8983165 |
T |
|
| Q |
328 |
agagatggagtgtattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgtttttgaacaacatagc |
427 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
8983166 |
agagatggagcgtattgctcagaatgccaattacacggtagagcatacagggaatgatgaaaatggagacagaattttgactatttttgaaccacatagc |
8983265 |
T |
|
| Q |
428 |
aatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactctggttctttctgagtaac |
527 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | |||||||| || ||| |
|
|
| T |
8983266 |
aatccaaatgttcaacatgacttggatctttggatgcgtgtccgtgaatatgacaaagccaacgtggagttacccttcactccgtttctttctaagaaac |
8983365 |
T |
|
| Q |
528 |
aaaagcagcaagttagaaagcagcttcagattggcaagccaccgccatataaaacccgctcttaaggaggatcaaattcaagtga |
612 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||| |
|
|
| T |
8983366 |
aaaagcggcaagttaaaaagcagcttcagattggcaagccaccgccatataaaacccgctctcatgcaggatcaaattcaggtga |
8983450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 40 - 600
Target Start/End: Complemental strand, 33065838 - 33065284
Alignment:
| Q |
40 |
tgatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatgag |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| || || || ||| | | ||||||||| | ||| |||||||||| |||||| || | |
|
|
| T |
33065838 |
tgatgatgtgcacgctgacgtgctttcggatgccgtggaacaagtaaactctgaatcgcaggaggagtttgtgataccccggattcagaatgcaactgtg |
33065739 |
T |
|
| Q |
140 |
acatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaacttgata |
239 |
Q |
| |
|
| |||| ||||| ||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
33065738 |
atgcatccgtcctcagattcccatgatgatgagcattcttttactgttgatttggaggcctcctcttctgctagggagatgtcacaaactcaac------ |
33065645 |
T |
|
| Q |
240 |
ttgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacactgccacttttttagagatggagtg |
339 |
Q |
| |
|
||||| ||||| |||||| ||||| | |||||||| ||||| ||||||||||| || |||||| |||||||| |||| |||||| || |||||| |
|
|
| T |
33065644 |
atgatgtagcgcacgatgacgtgcaaaccagtccccaagatggtccccttgttgttagatccatccctgacgacaccgccatttttttggaaatggagca |
33065545 |
T |
|
| Q |
340 |
tattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgtttttgaacaacatagcaatctgaatgtt |
439 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||| ||| |||||| ||||| |||| |||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
33065544 |
ccttgctcagaacaccaattacacggttgaacatttggggagtgatgagaatggcgacagaattttgactgtttatgaaccacatagcaatccgaatgtg |
33065445 |
T |
|
| Q |
440 |
caacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactctggttctttctgagtaacaaaagcagcaag |
539 |
Q |
| |
|
|| || ||| | || || ||||||| || ||||||||||||||||| || ||||| ||| ||||||| ||| | ||| | ||||||| || || | |
|
|
| T |
33065444 |
cagcacgacctagacctctggatgcgtgatcgtgaatatgacaaagctaatgcagatagacctttcactccggtcttatctcggaaacaaaaacaacagg |
33065345 |
T |
|
| Q |
540 |
ttagaaagcagcttcagattggcaagccaccgccatataaaacccgctcttaaggaggatc |
600 |
Q |
| |
|
|||| || | ||||| ||||| |||| |||||| ||||||||||||||| | |||||||| |
|
|
| T |
33065344 |
ttaggaaaaatcttcaaattggtaagcaaccgccttataaaacccgctctcagggaggatc |
33065284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 39 - 233
Target Start/End: Complemental strand, 21492704 - 21492510
Alignment:
| Q |
39 |
ttgatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatga |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |||| |||| |||| || || |
|
|
| T |
21492704 |
ttgatgatgtgcacgatgacgtgctttcggatgatgtggaacaagtttattcagaatcacgggaggagttggagatgccccagatttcgaatgaacctgt |
21492605 |
T |
|
| Q |
139 |
gacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaac |
233 |
Q |
| |
|
|||| | |||| || || ||||| || ||||||||| ||||| ||||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
21492604 |
gacactttcatcttctgatgcccattttgatgagcattatttgatcgttgatttggaggcctccgcttctgatagggagacgtcgccaactcaac |
21492510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 19273841 - 19273915
Alignment:
| Q |
51 |
acgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccggattc |
125 |
Q |
| |
|
|||||||| |||||| ||||| || ||||||||| | ||| | | |||||||||||||||||||||||||||| |
|
|
| T |
19273841 |
acgatgacatgcttttggatgttgaggaacatgtaagttcgataactcgggaggagttggagattccccggattc |
19273915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 19273969 - 19274007
Alignment:
| Q |
179 |
ttgactgttgatttggaggcctccgcttctgctagggag |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19273969 |
ttgactgttgatttggattcctccgcttctgctagggag |
19274007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 76 - 612
Target Start/End: Complemental strand, 27207307 - 27206795
Alignment:
| Q |
76 |
ggaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatgagacatatccatcctcgaattcccatgtttatgagcat |
175 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| |||||| |||| || ||| ||||||||||||| |
|
|
| T |
27207307 |
ggaacatgttaattcggaaccacgggaggagttggagattc------ttcagaatgcacttgagacacatccatgctcggatgcccttgtttatgagcat |
27207214 |
T |
|
| Q |
176 |
tctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtcccc |
275 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
27207213 |
tctttgactgttgatttggaggcctctgcttctgctagggagatgtcaccaactcaacttaatattgatgatgcgcacgatgacgtgcaatctag----- |
27207119 |
T |
|
| Q |
276 |
acgatggcccccttgttgtcaggtccatcttggacgacactgccacttttttagagatggagtgtattgctcagaatgccaattacacgattgagcatac |
375 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||| |
|
|
| T |
27207118 |
-------cccccttgttgtcagatccatcccggacgacactgccacttttttagagatggagcgtattgctcagaat------tacacagttgcgcatac |
27207032 |
T |
|
| Q |
376 |
aaggactgatgaaaatggagacaaaattttgactgtttttgaacaacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaa |
475 |
Q |
| |
|
| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27207031 |
agggactaatgaaaatggagacagaattttgactgtttttgaaccacatagcaatccgaatgttcaacatgacttggatctttggatgcgtgtccgtgaa |
27206932 |
T |
|
| Q |
476 |
tatgacaaagccaacgcagagttacccttcactctggttctttctgagtaacaaaagcagcaagttagaaagcagcttcagattggcaagccaccgccat |
575 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
27206931 |
tatgacaaagccaatgcggagttacctttcactccggttctttctaagaaacaaaagcagcaagttaaaaagcagcttcagattggcaagccaccaccat |
27206832 |
T |
|
| Q |
576 |
ataaaacccgctcttaaggaggatcaaattcaagtga |
612 |
Q |
| |
|
|||||||||||||| | |||| |||||||||| |||| |
|
|
| T |
27206831 |
ataaaacccgctctcagggagaatcaaattcaggtga |
27206795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 22 - 612
Target Start/End: Original strand, 20381425 - 20381988
Alignment:
| Q |
22 |
accagtgttggagttagtt------gatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagatt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
20381425 |
accagtgttggagttagtttcccctgatgatgtgcatgatgacgtgctttcgga---------acatgttaattcggaaccacgagaggagttggagatt |
20381515 |
T |
|
| Q |
116 |
ccccggattcgtaatgcacatgagacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctaggg |
215 |
Q |
| |
|
| ||| ||||||||||||||| |||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20381516 |
c------ttcaaaatgcacatgagacacatccatgctcggatgcccttgtttatgagcattctttgactgttgatttggaggcctctgcttctgctaggg |
20381609 |
T |
|
| Q |
216 |
agatgttaccaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacac |
315 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||| ||| |||||| |||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
20381610 |
agatgtcaccaactcaacataatattgatgatgtgcacgatgacgtgcaatctag------------cccccttgttgtcagatccatcccggacgacac |
20381697 |
T |
|
| Q |
316 |
tgccacttttttagagatggagtgtattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgttttt |
415 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
20381698 |
tgccacttttttagagatggagcgtattgctcagaat------tacacagttgcgcatacagggactaatgaaaatggagacagaattttgactgttttt |
20381791 |
T |
|
| Q |
416 |
gaacaacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactctggttc |
515 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
20381792 |
gaaccacatagcaatccgaatgttcaacatgacttggatctttggatgcgtgtccgtgaatatgacaaagccaatgcagagttaccattcactccagttc |
20381891 |
T |
|
| Q |
516 |
tttctgagtaacaaaagcagcaagttagaaagcagcttcagattggcaagccaccgccatataaaacccgctcttaaggaggatcaaattcaagtga |
612 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
20381892 |
tttctaagaaacaaaagcagcaagttaaaaagcagcttcagattggcaagccaccaccatataaaacccgctctcagggaggatcaaattcaggtga |
20381988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 76 - 612
Target Start/End: Complemental strand, 11293464 - 11292953
Alignment:
| Q |
76 |
ggaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatgagacatatccatcctcgaattcccatgtttatgagcat |
175 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||| || ||| ||||||||||||| |
|
|
| T |
11293464 |
ggaacatattaattcggaaccacgggaggagttggagattc------ttcagaatgcacatgagacacatccatgctcggatgcccttgtttatgagcat |
11293371 |
T |
|
| Q |
176 |
tctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtcccc |
275 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||| | |||||||||| |
|
|
| T |
11293370 |
tctttgactgttgatttggaggcctctgcttctgctagggagatgtcaccaactcaacttaat-ttgatgatgcgcatgatggcgtgcaatctag----- |
11293277 |
T |
|
| Q |
276 |
acgatggcccccttgttgtcaggtccatcttggacgacactgccacttttttagagatggagtgtattgctcagaatgccaattacacgattgagcatac |
375 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
11293276 |
-------cccccttgttgtcagatccatcccggacgacactgccacttttttagagatggagcgtattgctcagaat------tacacggttgagcatac |
11293190 |
T |
|
| Q |
376 |
aaggactgatgaaaatggagacaaaattttgactgtttttgaacaacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaa |
475 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
11293189 |
agggactaatgaaaatggagacaaaattttgactgtttttgaaccacatagcaatccgaatgttcaacatgacttggatctttggatgcgtatccgtgaa |
11293090 |
T |
|
| Q |
476 |
tatgacaaagccaacgcagagttacccttcactctggttctttctgagtaacaaaagcagcaagttagaaagcagcttcagattggcaagccaccgccat |
575 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||| |||||||||| || |||||||||||||||||| ||| |||||| |||||||||||||||| |||| |
|
|
| T |
11293089 |
tatgacaaagccaatgcggagttaccctttactccggttctttctaagaaacaaaagcagcaagttaaaaaacagctttagattggcaagccaccaccat |
11292990 |
T |
|
| Q |
576 |
ataaaacccgctcttaaggaggatcaaattcaagtga |
612 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
11292989 |
ataaaacccgctctcagggaggatcaaattcaggtga |
11292953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 444 - 704
Target Start/End: Complemental strand, 38993687 - 38993442
Alignment:
| Q |
444 |
atgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactctggttctttctgagtaacaaaagcagcaagttag |
543 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||| || | |||||||||| |
|
|
| T |
38993687 |
atgacttggatctttggatgcgtgtccgtgaatatgacaaagtcaacgcggagttacccttcactccagttctttctaagaatcaaaagcagc------- |
38993595 |
T |
|
| Q |
544 |
aaagcagcttcagattggcaagccaccgccatataaaacccgctcttaaggaggatcaaattcaagtgaccaatgaactatcttggaatgttcgcggttt |
643 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38993594 |
--------tttaaattggcaagccaccgccatataaaacccgctctcagggaggatcaaattcaggtgaccaatgaactatcttggaatgttcgcggttt |
38993503 |
T |
|
| Q |
644 |
cggcacttctgacaccaaaatcnnnnnnnggcggagccaatggtatcacttgcacaggttc |
704 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
38993502 |
cggcacttctgacaccaaaatcgttttttggcggagccaatggtatcacttgcacatgttc |
38993442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 77 - 612
Target Start/End: Complemental strand, 38500786 - 38500275
Alignment:
| Q |
77 |
gaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatgagacatatccatcctcgaattcccatgtttatgagcatt |
176 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| |||||| |||| || ||| ||||| |||||||| |
|
|
| T |
38500786 |
gaacatgttaatttggaaccacgggaggagttggagattc------ttcagaatgcacttgagacacatccatgctcggatgcccttgtttgtgagcatt |
38500693 |
T |
|
| Q |
177 |
ctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtcccca |
276 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
38500692 |
ctttgactgttgatttggaggcctctgcttctgctagggagatgtcaccaactcaacttaatattgatgatgcgcacgatgacgtgcaatctag------ |
38500599 |
T |
|
| Q |
277 |
cgatggcccccttgttgtcaggtccatcttggacgacactgccacttttttagagatggagtgtattgctcagaatgccaattacacgattgagcataca |
376 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||| |
|
|
| T |
38500598 |
------ccctcttgttgtcagatccatcccggacgacactgccacttttttagagatggagcgtattgctcagaat------tacacggttgcgcataca |
38500511 |
T |
|
| Q |
377 |
aggactgatgaaaatggagacaaaattttgactgtttttgaacaacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaat |
476 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38500510 |
gggactaatgaaaatggagacagaattttgactgtttttgaaccacatagcaatccgaatgttcaacatgacttggatctttggatgcgtgtccgtgaat |
38500411 |
T |
|
| Q |
477 |
atgacaaagccaacgcagagttacccttcactctggttctttctgagtaacaaaagcagcaagttagaaagcagcttcagattggcaagccaccgccata |
576 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||||| || | |||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
38500410 |
atgacaaagccaatgtggagttacccttcactccggttctttctaagaagcaaaagcagcaagttaaaaagcagcttcagattgacaagccaccaccata |
38500311 |
T |
|
| Q |
577 |
taaaacccgctcttaaggaggatcaaattcaagtga |
612 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
38500310 |
taaaacctgctcttaaggaggatcaaattcaggtga |
38500275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 40 - 495
Target Start/End: Original strand, 9284325 - 9284774
Alignment:
| Q |
40 |
tgatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatgag |
139 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| || |||| |||| | |||| |||||||| | | |||||||| | |||||| || | |
|
|
| T |
9284325 |
tgatgatgtgcacattgacgtgctttcggatgatgtggaacaagtaaatttagaatcgcggggggagttggtggtaccccggatccacgatgcacctgtg |
9284424 |
T |
|
| Q |
140 |
acatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaacttgata |
239 |
Q |
| |
|
| | |||||||||| ||| |||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
9284425 |
atacatccatcctcaaatgcccatgatgatgagcattctttaactgttgatttggaggcctccgcttctactagggagatgtcaccgactcaac------ |
9284518 |
T |
|
| Q |
240 |
ttgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacactgccacttttttagagatggagtg |
339 |
Q |
| |
|
||||| ||||| |||||| ||||| | |||||||| ||||| ||||||||||| || | ||| ||| ||||| |||||||||| || |||||| | |
|
|
| T |
9284519 |
atgatgtagcgcacgatgacgtgcaaaccagtccccaagatggtccccttgttgttagattcattcctgacaacactaccacttttttcgaaatggagcg |
9284618 |
T |
|
| Q |
340 |
tattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgtttttgaacaacatagcaatctgaatgtt |
439 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||| | | |||||| ||||| |||| || |||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
9284619 |
ccttgctcagaacaccaattacacgattgaacagacaggtaatgatgagaatggcaacaacatcttgactgtttatgaacctcatagcaatccgaatgtt |
9284718 |
T |
|
| Q |
440 |
caacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcaga |
495 |
Q |
| |
|
|| ||||| ||||| ||||||| || ||| | |||||||||||||||||| ||||| |
|
|
| T |
9284719 |
catcatgatttggaactttggaggcgtgttcatgaatatgacaaagccaatgcaga |
9284774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 612
Target Start/End: Complemental strand, 4370 - 3815
Alignment:
| Q |
22 |
accagtgttggagttagtt------gatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagatt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4370 |
accagtgttggagttagtttcccctgatgatgtgcatgatgacgtgctttcgga---------acatgttaatttggaaccacgggaggagttggagatt |
4280 |
T |
|
| Q |
116 |
ccccggattcgtaatgcacatgagacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctaggg |
215 |
Q |
| |
|
| ||| |||||||||||||||| ||||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4279 |
c------ttcataatgcacatgagacacatccatcctcggatgcccttgtttgtgagcattctttgactgttgatttggaggcctctgcttctgctaggg |
4186 |
T |
|
| Q |
216 |
agatgttaccaactcaacttgatattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacac |
315 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
4185 |
agatgtcaccaactcaacttaatattgatgatgcgcacgatgacgtgcaatcta------------gcccccttgttgtcagatccatcccggacgacac |
4098 |
T |
|
| Q |
316 |
tgccacttttttagagatggagtgtattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgttttt |
415 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
4097 |
tgccacttttttagagatggagcgtattgctca------taattacacggttgagcatacagggactaatgaaaatggagacagaattttgactgttttt |
4004 |
T |
|
| Q |
416 |
gaacaacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcagagttacccttcactctggttc |
515 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
4003 |
gaaccacatagcaatccgaatgttcaacatgac--------ttggatgcgtgtccgtgaatatgacaaagccaatgcggagttacccttcactccggttc |
3912 |
T |
|
| Q |
516 |
tttctgagtaacaaaagcagcaagttagaaagcagcttcagattggcaagccaccgccatataaaacccgctcttaaggaggatcaaattcaagtga |
612 |
Q |
| |
|
||||| || |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
3911 |
tttctaagaaacaaaagcataaagttaaaaagcagcttcagattggcaagccaccaccatataaaacccgctctcagggaggatcaaattcaggtga |
3815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 8e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 38 - 495
Target Start/End: Complemental strand, 13581219 - 13580772
Alignment:
| Q |
38 |
gttgatgatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatg |
137 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| |||| | || || ||||| ||||||||||| | |||||||||| ||||| || |
|
|
| T |
13581219 |
gttgatgatgtgcacgctggcgtgctttcggatgatgtggaacgagttagtccataatcacggaaggagttggaggt-ccccggattcagggtgcacttg |
13581121 |
T |
|
| Q |
138 |
agacatatccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaacttga |
237 |
Q |
| |
|
|||| |||||||||| || |||||| | || |||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||| |||||| |
|
|
| T |
13581120 |
tgacacatccatcctcagatgcccatgatgataagcattctttgactgttgatttggagacctccgcttcttctagggaggtgtcaccacctcaac---- |
13581025 |
T |
|
| Q |
238 |
tattgatgatgcgcatgatgacatgcaatctagtccccacgatggcccccttgttgtcaggtccatcttggacgacactgccacttttttagagatggag |
337 |
Q |
| |
|
||| ||| ||||| |||||| ||||| | ||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
13581024 |
-att-atgtagcgcacgatgacgtgcaaacctgtccccaggatagtccccttgttgtcaggtccatctcggacgacactgccacttttttggaaatggag |
13580927 |
T |
|
| Q |
338 |
tgtattgctcagaatgccaattacacgattgagcatacaaggactgatgaaaatggagacaaaattttgactgtttttgaacaacatagcaatctgaatg |
437 |
Q |
| |
|
| |||||||| | || ||||||| |||| || | | |||||||||| ||||| |||||||| || ||||||| ||||| ||||| |||| ||||| |
|
|
| T |
13580926 |
agacttgctcagca---cacttacacggttgaacagatatggactgatgagaatggcgacaaaatcttaactgtttatgaacctcatagtaatccgaatg |
13580830 |
T |
|
| Q |
438 |
ttcaacatgacttggatctttggatgcttgtccgtgaatatgacaaagccaacgcaga |
495 |
Q |
| |
|
|||| ||||| |||| ||||||||| ||| ||||| ||||||||||| || ||||| |
|
|
| T |
13580829 |
ttcagcatgatctggacctttggatgagtgttcgtgactatgacaaagctaatgcaga |
13580772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 474 - 645
Target Start/End: Original strand, 159980 - 160155
Alignment:
| Q |
474 |
aatatgacaaagccaacgcagagttacccttcactctggttctttctgagtaacaaaagcagcaagttagaaagcagcttcagattggcaagccaccgcc |
573 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | |||||||| || ||||||| || |||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
159980 |
aatatgacaaagccaacgcggagttacccttcactccgattctttctaagaaacaaaatcaacaagttagaaagcaacttcagattggtaagccgccgcc |
160079 |
T |
|
| Q |
574 |
atataaaacccgctcttaaggaggatcaaattcaagtgaccaatgaa----ctatcttggaatgttcgcggtttcg |
645 |
Q |
| |
|
|||||| ||||||| | | |||||||| |||||| |||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
160080 |
atataatacccgctttcagggaggatccaattcaggtgaccaatgaattctctatattggaatgctcgcggtttcg |
160155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 46129 - 45940
Alignment:
| Q |
44 |
gatgtgcacgatgacgtgctttcggatgatgtggaacatgttaattcagaaccacgggaggagttggagattccccggattcgtaatgcacatgagacat |
143 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||| ||| ||||| | || ||||| |||| |
|
|
| T |
46129 |
gatgtgcacgatgacgtgcttttggatgatgtggaacaagtttattcagaatcacgggaggagttggagataccctggattttgactgaacatgtgacac |
46030 |
T |
|
| Q |
144 |
atccatcctcgaattcccatgtttatgagcattctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaac |
233 |
Q |
| |
|
| |||| | || || || || |||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||| ||||| |
|
|
| T |
46029 |
tttcatcttatgatgcctattttgatgagcattctttgaccgttgatttggaggcctccgcttctgataggtagatgtcaccaattcaac |
45940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 380 - 484
Target Start/End: Complemental strand, 45814 - 45710
Alignment:
| Q |
380 |
actgatgaaaatggagacaaaattttgactgtttttgaacaacatagcaatctgaatgttcaacatgacttggatctttggatgcttgtccgtgaatatg |
479 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||| || || || |||| |||||||||| ||| |||||||||| |
|
|
| T |
45814 |
actgatgaaaatggagacataattttgactgtttctgaacctcatagcaatccgaatgtgcagcacgagctggacctttggatgcgtgttcgtgaatatg |
45715 |
T |
|
| Q |
480 |
acaaa |
484 |
Q |
| |
|
||||| |
|
|
| T |
45714 |
acaaa |
45710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 45642 - 45593
Alignment:
| Q |
551 |
cttcagattggcaagccaccgccatataaaacccgctcttaaggaggatc |
600 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
45642 |
cttcagattggtaagccaccgcaatacaaaacccgctctcaaggaggatc |
45593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 114786 - 114846
Alignment:
| Q |
173 |
cattctttgactgttgatttggaggcctccgcttctgctagggagatgttaccaactcaac |
233 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||| |||| |||||||| ||| ||||||| |
|
|
| T |
114786 |
cattccttgattgttgacttggaggcctccgcttcagctacggagatgtcaccgactcaac |
114846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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