View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_low_10 (Length: 395)
Name: NF12196_low_10
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 23635743 - 23635378
Alignment:
| Q |
13 |
cctgtgttaatccggaatgcactaacaaaaacaactagttgactgtagaatgcgattcaatagttttgtttggcttattgtaaaaattgcttgtgattgg |
112 |
Q |
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| T |
23635743 |
cctgtgttaatccggaatgcactaacaaaaacaactagttggctgtagaatgcgattcaatagttttgtttggcttattgtaaaaattgcttgtgattgg |
23635644 |
T |
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| Q |
113 |
tataaacacatttggtgatgttataagttgcatgcttggtgagttaatgtggtgcatcttatgatataagctgagtagctgactttcttgcatgatgctc |
212 |
Q |
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| T |
23635643 |
tataaacacatttggtgatgttataagttgcatgcttggtgagttaatgtggtgcatcttatgatataagctgagtagctgactttcttgcatgatgctc |
23635544 |
T |
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| Q |
213 |
aagtgcccttgtttgaaacacatcatgtttctctattttttaaaatgaatctgttagctagtgttagattttattgtcaatattgattttctttgtctct |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23635543 |
aagtgcccttgtttgaaacacatcatgtttctgtattttttaaaatgaatctgttagctagtgttagattttattgtcaatattgattttctttgtctct |
23635444 |
T |
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| Q |
313 |
tgcaacttgcagcaacatttccattggaacttgttgggcgaaggatgcagttagaaggggttggtg |
378 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
23635443 |
tgcaacttgcagcaacatttccattggatcttgttaggcgaaggatgcagttagaaggggttggtg |
23635378 |
T |
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