View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_low_14 (Length: 330)
Name: NF12196_low_14
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 44800689 - 44800996
Alignment:
| Q |
17 |
aaatggttatgatgcctctagtttagttgatgtaaaaattggactcataatagaactcattaacttaaatggacattgtttcaaatttaatgttacaagg |
116 |
Q |
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| T |
44800689 |
aaatggttatgatgcctctggtttagttgatgtaaaaattggactcataataggactcattaacttaaatggacattgtttcaaatttaatgttacaagg |
44800788 |
T |
|
| Q |
117 |
aaagtagggttatgtgactagctcatatggaattaatgttagaaattgataagacaatgttacaatttgaaaactgaattgaaatgtcacaatttgaaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||| |||||||||||| |
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| T |
44800789 |
aaagtagggttatgtgactagctcatatggaattaatgttagaaattgatctgacattgttacaattcgaaaactgaactgaaatgttacaatttgaaag |
44800888 |
T |
|
| Q |
217 |
gagaagtgtgatacaactatgcatggggtttagtaaacaataatgatatttgaacgctcaaaattttccaacactcatctaacgcctcattttctcttca |
316 |
Q |
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||||||| ||||||| |||| || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||| | |
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| T |
44800889 |
gagaagtatgatacagctatacaaggggtttaataaacaataatgatatttggacgctcaaaattttccaacactcatctaatgctttattttctcttta |
44800988 |
T |
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| Q |
317 |
tctctctc |
324 |
Q |
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|||||||| |
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| T |
44800989 |
tctctctc |
44800996 |
T |
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