View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_low_20 (Length: 238)
Name: NF12196_low_20
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10330304 - 10330082
Alignment:
| Q |
1 |
catctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaactcccccaccttccttctctttaggtaaacacact |
100 |
Q |
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| T |
10330304 |
catctttctccctccttaacctccaacaccacttccttaaaagagccaaataaaaaacttgtaaactcccc-accttccttctctttaggtaaacacact |
10330206 |
T |
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| Q |
101 |
ttgtctcaatgaacccaatgaattttacaagtctcaattttaagaataatacctgaaaaacctttgaaaaaggaaaggaggtatactagcatagaggttt |
200 |
Q |
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| T |
10330205 |
ttgtctcaatgaacccaacgaattttacaagtctcaattttaagaatgatatctgaaaaacctttaaaaaaggaaaggaggtatactagcatagatgttt |
10330106 |
T |
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| Q |
201 |
aaatagacttcaaaagaattaggt |
224 |
Q |
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| T |
10330105 |
aaatagacttcaaaagaattaggt |
10330082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35518289 - 35518353
Alignment:
| Q |
1 |
catctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaa |
65 |
Q |
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| T |
35518289 |
catcattctccctccttaacatccaacaccacttccctaaaatatgtaaattaaaaacttttaaa |
35518353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 16552782 - 16552830
Alignment:
| Q |
80 |
ttctctttaggtaaacacactttgtctcaatgaacccaatgaattttac |
128 |
Q |
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| T |
16552782 |
ttctctttatgtaaagacactttgttcaaatgaacccaatgaattttac |
16552830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 26526027 - 26525979
Alignment:
| Q |
78 |
ccttctctttaggtaaacacactttgtctcaatgaacccaatgaatttt |
126 |
Q |
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| T |
26526027 |
ccttctcttttggtaaacacactttgtttcagtggacctaatgaatttt |
26525979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 44632488 - 44632438
Alignment:
| Q |
81 |
tctctttaggtaaacacactttgtctcaatgaacccaatgaattttacaag |
131 |
Q |
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| T |
44632488 |
tctctttaggtaaacacactttgtctcaatagacccgatcaattttacaag |
44632438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 53653665 - 53653605
Alignment:
| Q |
5 |
tttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaa |
65 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
53653665 |
tttctccctctttaatctccaacaccacttatctaaaagagctaaattaaaaacttttaaa |
53653605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 42133663 - 42133612
Alignment:
| Q |
80 |
ttctctttaggtaaacacactttgtctcaatgaacccaatgaattttacaag |
131 |
Q |
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||||||||||||||||||| |||||| |||||||| ||||| ||||||||| |
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| T |
42133663 |
ttctctttaggtaaacacattttgtcccaatgaacttaatgagttttacaag |
42133612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 13465995 - 13466049
Alignment:
| Q |
6 |
ttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaactt |
60 |
Q |
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||||| ||| ||||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
13465995 |
ttctcactctttaacctccaacaccacttccctaaaatggctaaattaaaaactt |
13466049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 44598060 - 44598112
Alignment:
| Q |
83 |
tctttaggtaaacacactttgtctcaatgaacccaatgaattttacaagtctc |
135 |
Q |
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|||||| | |||||||||||||| |||||||||||| |||||||| |||||| |
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| T |
44598060 |
tctttatgcaaacacactttgtcctaatgaacccaataaattttacgagtctc |
44598112 |
T |
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