View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12196_low_7 (Length: 469)
Name: NF12196_low_7
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 85 - 455
Target Start/End: Complemental strand, 21264764 - 21264394
Alignment:
| Q |
85 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
184 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21264764 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21264665 |
T |
|
| Q |
185 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264664 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaa |
21264565 |
T |
|
| Q |
285 |
gttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctcag |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264564 |
gttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtcctcag |
21264465 |
T |
|
| Q |
385 |
atttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264464 |
atttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca |
21264394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 21260183 - 21259995
Alignment:
| Q |
85 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
184 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21260183 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21260084 |
T |
|
| Q |
185 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21260083 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
21259995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 84 - 455
Target Start/End: Complemental strand, 47805337 - 47804966
Alignment:
| Q |
84 |
ttgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctattttta |
183 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47805337 |
ttgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctattttta |
47805238 |
T |
|
| Q |
184 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctca |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47805237 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctca |
47805138 |
T |
|
| Q |
284 |
agttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctca |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47805137 |
agttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtcctca |
47805038 |
T |
|
| Q |
384 |
gatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47805037 |
gatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca |
47804966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 93 - 273
Target Start/End: Complemental strand, 47800746 - 47800566
Alignment:
| Q |
93 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
192 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
47800746 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagattga |
47800647 |
T |
|
| Q |
193 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
273 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47800646 |
aataatggtaaattatttttgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
47800566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 34167698 - 34167767
Alignment:
| Q |
260 |
aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttg |
329 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||| |
|
|
| T |
34167698 |
aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttg |
34167767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 84 - 455
Target Start/End: Complemental strand, 6847908 - 6847537
Alignment:
| Q |
84 |
ttgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctattttta |
183 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6847908 |
ttgttaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctattttta |
6847809 |
T |
|
| Q |
184 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctca |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6847808 |
ctagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacgctccccctca |
6847709 |
T |
|
| Q |
284 |
agttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctca |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6847708 |
agttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtgctca |
6847609 |
T |
|
| Q |
384 |
gatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6847608 |
gatttaacaaatggaaattgaattattttggtctccagattttgtttaataaaccgccgatctacttccaca |
6847537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 93 - 274
Target Start/End: Complemental strand, 6843296 - 6843115
Alignment:
| Q |
93 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
192 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
6843296 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaatctatttttactagactga |
6843197 |
T |
|
| Q |
193 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacac |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6843196 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacac |
6843115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 5860714 - 5860783
Alignment:
| Q |
260 |
aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttg |
329 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||| |
|
|
| T |
5860714 |
aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttg |
5860783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 262 - 455
Target Start/End: Original strand, 38460058 - 38460251
Alignment:
| Q |
262 |
ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgag |
361 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||||||||| |
|
|
| T |
38460058 |
ctcacaccaacactccccctcaagttggtgcatagagatctcgaatacccaacttgtcaagtgagttgaagaagtctctgctacatacagcttttgtgag |
38460157 |
T |
|
| Q |
362 |
tatatctgctaactggtcctcagatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca |
455 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38460158 |
tatatctgctaattgatcttcagatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca |
38460251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 262 - 409
Target Start/End: Original strand, 18043375 - 18043522
Alignment:
| Q |
262 |
ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgag |
361 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||| | ||||| |||||||||| |
|
|
| T |
18043375 |
ctcacaccaacacttcccctcaagttggtgcacagagatcttgaatgcccaacttatcaagtgagttgtaaaagtctctggtacatacaacttttgtgag |
18043474 |
T |
|
| Q |
362 |
tatatctgctaactggtcctcagatttaacaaatggaaattgaattat |
409 |
Q |
| |
|
|||||||| ||| || || | |||||||||||||||||| |||||||| |
|
|
| T |
18043475 |
tatatctgataattgatctttagatttaacaaatggaaactgaattat |
18043522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 15646266 - 15646335
Alignment:
| Q |
260 |
aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttg |
329 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||| |
|
|
| T |
15646266 |
aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttg |
15646335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 522497 - 522561
Alignment:
| Q |
262 |
ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgag |
326 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || | |||||| ||||||||||||||| |
|
|
| T |
522497 |
ctcacaccaacactccccctcaagttggtgcatagatatcattaatgcctaacttgtcaagtgag |
522561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 31289542 - 31289581
Alignment:
| Q |
7 |
cagaacctgtgtagcagcaacaacactttatggctcttgt |
46 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
31289542 |
cagaacctgtgtagcagaaacaacactgtatggctcttgt |
31289581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 26853949 - 26853986
Alignment:
| Q |
9 |
gaacctgtgtagcagcaacaacactttatggctcttgt |
46 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
26853949 |
gaacttgtgtagcagcaacaacactgtatggctcttgt |
26853986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 29269829 - 29269788
Alignment:
| Q |
5 |
agcagaacctgtgtagcagcaacaacactttatggctcttgt |
46 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
29269829 |
agcagaacttgtgtagcagcaacaacactgtatggctcttgt |
29269788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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