View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12196_low_9 (Length: 427)
Name: NF12196_low_9
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 4818366 - 4817973
Alignment:
| Q |
18 |
gatcctagcagcttgttgtaggtgagcttctgagtcaacctctgagcaatctttccttggactcttgcaaagaataacttcacatgtttcatcttcatgg |
117 |
Q |
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| T |
4818366 |
gatcctagcagcttgttgtaggtgagcttctgagtcaacctctgagcaatctttccttggactcttgcaaagaataacttcacatgtttcatcttcatgg |
4818267 |
T |
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| Q |
118 |
tctccatctatctccacactgtattttcctgatttatctgttgttgcttctttgttgaatgtcaatgttccattatcttctttgcattccacacgcaccg |
217 |
Q |
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| T |
4818266 |
tctccatctatctccacactgtattttcctgatttatctgttgttgcttctttgttgaatgtcaatgttccattatcttctttgcattccacacgcaccg |
4818167 |
T |
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| Q |
218 |
ttgcaccttcattac--atatggccacacaaattattatttatatatgtcaagttgcaagacattcgatatgctaaggcacaagttagaactcctaattc |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
4818166 |
ttgcaccttcattacatatatggccacacaaattattatttatatatgtcaatttgcaagacattggatatgctaaggcacgagttagaactcctaattc |
4818067 |
T |
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| Q |
316 |
tccacttcttagtaataaatgtgtgtgagtttcatcgttagactc-tttnnnnnnntaataatcaatagtcttaatttcacttttaggtatcat |
408 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4818066 |
tccgcttcttagtaataaatgtgtgtgagtttcatcgttagactcttttaaaaaaataataatcaatagtcttaatttcacttttaggtatcat |
4817973 |
T |
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