View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12197_high_1 (Length: 559)
Name: NF12197_high_1
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12197_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 17003176 - 17003446
Alignment:
| Q |
11 |
gaacctgtgtagaagttttattgtacttgtctcctatttcagtgatcttctttagcagtggttgaagctgcaaaacaaataaacacttgaggaaccaagt |
110 |
Q |
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| T |
17003176 |
gaacctgtgtagaagttttattgtatttctctcctatttcagtgatcttctttagcagtggttgaagctgcaaaacaaataaacatttgaggaaccaagt |
17003275 |
T |
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| Q |
111 |
aatatcggtatcattcattggatacggaaatttcagaaaagttgtacctttgttaggaattctggagtataaattctacctcgaggcccagatggaggat |
210 |
Q |
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| T |
17003276 |
actatcggtataattcattagatacggaaatttcagaaaagttgtacctttgttaagaattctggagtataaattctacctcgaggcccagatggaggat |
17003375 |
T |
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| Q |
211 |
ttcgtggagtatactttccagtaagaacacctgcttaagataacgattttgcataaattttgcggctatta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17003376 |
ttcgtggagtatactttccagtaagaacacctgcttaagataacgattttgcataaattttgcggctatta |
17003446 |
T |
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