View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12197_high_3 (Length: 449)
Name: NF12197_high_3
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12197_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 9816591 - 9817010
Alignment:
| Q |
12 |
tgtggaagaaaatggtctttgtatcatttggatgtgaaatcaacattcttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9816591 |
tgtggaagaaaatggtctttgtatcatttggatgtgaaatcaacattcttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttca |
9816690 |
T |
|
| Q |
112 |
aagtaaaaggaaatgaatatatggtattcagattgcacaaagcaaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttct |
211 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9816691 |
aagtaaaagaaaatgaatatatggtattcagattgcacaaagcaaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttct |
9816790 |
T |
|
| Q |
212 |
agttcaagaaga-ttttttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatga |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9816791 |
agttcaagaagatttttttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatga |
9816890 |
T |
|
| Q |
311 |
tttagtggaaactgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttc |
410 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9816891 |
tttagtgaaaactgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttc |
9816990 |
T |
|
| Q |
411 |
tttggaatagaattcactaa |
430 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9816991 |
tttggaatagaattcactaa |
9817010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 11753805 - 11753462
Alignment:
| Q |
36 |
catttggatgtgaaatcaacattcttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatgg |
135 |
Q |
| |
|
||||||||||| |||| | |||| | ||| ||| ||||||| || ||||||||||| ||||||||| ||| |||||||| |||||||||||| ||||| |
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| T |
11753805 |
catttggatgtaaaattagaattcctgaatggtctacttgatgaagtggtgtatgtcacacaacctccagaattcaaagttaaaggaaatgaagatatga |
11753706 |
T |
|
| Q |
136 |
tattcagattgcacaaagcaaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagattttttcaaata |
235 |
Q |
| |
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|||||||| ||||||||| | || |||||| | | || |||||||| ||| |||| ||||||||||||| ||||| || |||| |||||||||| |
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| T |
11753705 |
tattcagagtgcacaaagttttcttcggattgaagcaagttcaaagagcct-gaaaaaaatgattgacaactttatagttgaacaagaatttttcaaatg |
11753607 |
T |
|
| Q |
236 |
caaagatgaaaatgttatgtatgtgaag-aatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtggaaactgaaagcaattt |
334 |
Q |
| |
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||| |||| ||| | ||| || ||| || | ||||| || || ||||| |||||| || |||| ||||| || |||||| ||| ||||||||| |
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| T |
11753606 |
caagtttgaatatggtgtgtctgaaaagaaaaaaaaaatgtaatgatatggtgcttatctgtctatatgttgattatctagtggtcactagaagcaattt |
11753507 |
T |
|
| Q |
335 |
atctgaggtagatgaattcaaaagacaaatgatgaaagagtttga |
379 |
Q |
| |
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| ||||| |||| ||||||||||||| ||||||||||||||||| |
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|
| T |
11753506 |
acctgagatagaataattcaaaagacagatgatgaaagagtttga |
11753462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 24645140 - 24645322
Alignment:
| Q |
36 |
catttggatgtgaaatcaacattcttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatgg |
135 |
Q |
| |
|
||||||||||| || | | ||| ||||||| | |||||| || || | ||||||||| ||||| ||| ||| ||||| || ||||||| |||||||||| |
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| T |
24645140 |
catttggatgtaaatttagcatccttaaatggaccactttatgaagttgtgtatgtcacacaatctctagaattcaaggtttaaggaaaggaatatatgg |
24645239 |
T |
|
| Q |
136 |
tattcagattgcacaaagcaaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaa |
218 |
Q |
| |
|
|||||||||| ||||| || ||||| ||| | |||| ||||| ||| || |||| |||||||||||||||||||||| |
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| T |
24645240 |
tattcagattacacaagacatcgtatgaaactaagcaagctcgaagagtctgaaataaaatgattgacaactttctagttcaa |
24645322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 15566287 - 15566058
Alignment:
| Q |
43 |
atgtgaaatcaacattcttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatggtattcag |
142 |
Q |
| |
|
||||||| |||||||| ||||| ||| ||| ||| || | ||||||||| ||||||||| || ||||||||| |||| ||| ||| |||||| ||| || |
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|
| T |
15566287 |
atgtgaagtcaacatttctaaatggtctactagatgaagttgtgtatgtcacacaacctctagggttcaaagtcaaagaaaaggaagatatggcatttag |
15566188 |
T |
|
| Q |
143 |
attgcacaaagcaaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagattttttcaaatacaaagat |
242 |
Q |
| |
|
||| || || || |||||||||||| | |||| |||||||||||| || ||||||||||||||||| || || || | ||| |||||| ||||| | |
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|
| T |
15566187 |
attacataaggctctatatggtttgaagcaagctccaagagcctggaataagaggattgacaactttcttgtgcagcaatactttgtcaaatgcaaagct |
15566088 |
T |
|
| Q |
243 |
gaaaatgttatgtatgtgaagaatagcaaa |
272 |
Q |
| |
|
||| ||| | | |||||||| ||||||||| |
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|
| T |
15566087 |
gaatatggtgtctatgtgaaaaatagcaaa |
15566058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 428
Target Start/End: Complemental strand, 16944340 - 16944146
Alignment:
| Q |
236 |
caaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtggaaactgaaagcaattta |
335 |
Q |
| |
|
||||| |||| ||| | ||||| |||| |||| |||| | ||| || | ||| ||||||||| |||| ||||| ||||||||| |||| |||||||||| |
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|
| T |
16944340 |
caaagttgaatatggtctgtatttgaaaaataacaaaggttataatcttgtgcttatctatctatatgttgataatttagtggtaactagaagcaattta |
16944241 |
T |
|
| Q |
336 |
tctgaggtagat--gaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattcact |
428 |
Q |
| |
|
|| || || | |||||||||||||||||||||||||| || ||||||||| |||||||| ||| |||| ||| ||||||||||||||||| |
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|
| T |
16944240 |
gcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcact |
16944146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 428
Target Start/End: Complemental strand, 17015005 - 17014811
Alignment:
| Q |
236 |
caaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtggaaactgaaagcaattta |
335 |
Q |
| |
|
||||| |||| ||| | ||||| |||| |||| |||| | ||| || | ||| ||||||||| |||| ||||| ||||||||| |||| |||||||||| |
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|
| T |
17015005 |
caaagttgaatatggtctgtatttgaaaaataacaaaggttataatcttgtgcttatctatctatatgttgataatttagtggtaactagaagcaattta |
17014906 |
T |
|
| Q |
336 |
tctgaggtagat--gaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattcact |
428 |
Q |
| |
|
|| || || | |||||||||||||||||||||||||| || ||||||||| |||||||| ||| |||| ||| ||||||||||||||||| |
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|
| T |
17014905 |
gcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcact |
17014811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 426
Target Start/End: Complemental strand, 15490915 - 15490517
Alignment:
| Q |
33 |
tatcatttggatgtgaaatcaacattcttaaatagtccacttgattaactggtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatata |
132 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||| ||| | || | ||| ||||| ||||||||| || ||||| | ||||| || |||||| |
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|
| T |
15490915 |
tatcacttggatgtgaaatcagcattcttaaatgatccatttgttgaagttgtgcatgtcacacaacctctaggattcaaccttaaagggaaggaatatt |
15490816 |
T |
|
| Q |
133 |
tggtattcagattgcacaaagcaaag-----tatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagatttt |
227 |
Q |
| |
|
||||||||| || ||||| |||| | ||||| || ||| | |||| |||| | || ||||| | ||||||||||||||||||||| | || ||| |
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|
| T |
15490815 |
tggtattcaatttacacaatgcaatgctttgtatggatttaagcaagctccaagaacgtgaaacaattgaattgacaactttctagttcaataggaattt |
15490716 |
T |
|
| Q |
228 |
ttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtggaaactgaaa |
327 |
Q |
| |
|
|||||| ||||| |||| || | ||||||||||||||| |||| | || || || |||| | || |||| |||||||||| |||| ||||| || |
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|
| T |
15490715 |
gtcaaatgcaaagttgaatattgtttgtatgtgaagaataacaaaggtagaaatctgatgcttatttgtctatatgttgatgatttcgtggtaactggaa |
15490616 |
T |
|
| Q |
328 |
gcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattca |
426 |
Q |
| |
|
|||| || |||| ||| ||||||| |||||||||||||| ||| ||||| ||| ||| |||||||| |||| ||| ||| ||| ||| ||||||| |
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|
| T |
15490615 |
ccaatataattgagaaagaagaattcataagacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattca |
15490517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 1831616 - 1831697
Alignment:
| Q |
349 |
aattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaattcactaa |
430 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||| |||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
1831616 |
aattcaaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaa |
1831697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 1831422 - 1831482
Alignment:
| Q |
158 |
gtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaa |
218 |
Q |
| |
|
|||||| |||||| | |||| |||||| |||||||||||||| | ||| |||||||||||| |
|
|
| T |
1831422 |
gtatggattgaagcaagctccaagagcatggaacaaaaggatggtcaagtttctagttcaa |
1831482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 30064901 - 30065062
Alignment:
| Q |
84 |
gtgtatgtctcacaacctcaagagttcaaagtaaaaggaaatgaatatatggtattcagattgcacaaagcaaagtatggtttgaagtatgctctaagag |
183 |
Q |
| |
|
||||||||| || ||||| || ||||||| | |||| ||||||| ||||| |||||||||| || || || |||||||||||| | ||||||||| |
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|
| T |
30064901 |
gtgtatgtcacaaaacctgcagggttcaaattcaaagaaaatgaagatatgatattcagattacataaggctctatatggtttgaagcaatctctaagag |
30065000 |
T |
|
| Q |
184 |
cctggaacaaaaggattgacaactttctagttcaagaagattttttcaaatacaaagatgaa |
245 |
Q |
| |
|
| ||||| || ||||||| |||||||||||| || |||| ||| |||||| ||||| |||| |
|
|
| T |
30065001 |
catggaataagaggattgtcaactttctagtgcagcaagaatttgtcaaatgcaaagctgaa |
30065062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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