View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12197_high_5 (Length: 347)
Name: NF12197_high_5
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12197_high_5 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19127273 - 19127358
Alignment:
| Q |
1 |
aaccgattcacgcaaactggtttgtcaaaattcactagggaattcttggaaatacacgtaccaacaaaccatctaagagacagtgg |
86 |
Q |
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| T |
19127273 |
aaccgattcacgcaaactggtttgtcaaaattcactagggaattcttggaaatacacgtaccaacaaaccatctaagagacagtgg |
19127358 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 19127454 - 19127505
Alignment:
| Q |
277 |
ctcttccatccatcaatcccttttcttctgctttatctttatctgtattatc |
328 |
Q |
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| T |
19127454 |
ctcttccatctatcaatcccttttcttctgctttatctttatctgtattatc |
19127505 |
T |
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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 39142136 - 39142082
Alignment:
| Q |
24 |
gtcaaaattcactagggaattcttggaaatacacgtaccaacaaaccatctaaga |
78 |
Q |
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| T |
39142136 |
gtcaaaattcgcaaggaaattctttgaaatacatgtaccagcaaaccatctaaga |
39142082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 14961651 - 14961588
Alignment:
| Q |
19 |
ggtttgtcaaaattcactagggaattcttggaaatacacgtaccaacaaaccatctaagagaca |
82 |
Q |
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| T |
14961651 |
ggttcgtcaaaattcgcaagggaattcttggaaatacatgcaccagcaaaccatctaagagaca |
14961588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 31315934 - 31315995
Alignment:
| Q |
24 |
gtcaaaattcactagggaattcttggaaatacacgtaccaaca---aaccatctaagagaca |
82 |
Q |
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| T |
31315934 |
gtcaaaattcacaagggaattctcagaaatacacgtaccaacaacgaaccatctaagagaca |
31315995 |
T |
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Target: scaffold0651 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 7763 - 7702
Alignment:
| Q |
24 |
gtcaaaattcactagggaattcttggaaatacacgtaccaaca---aaccatctaagagaca |
82 |
Q |
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| T |
7763 |
gtcaaaattcacaagggaattctcagaaatacacgtaccaacaacgaaccatctaagagaca |
7702 |
T |
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