View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12197_high_6 (Length: 330)

Name: NF12197_high_6
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12197_high_6
NF12197_high_6
[»] chr4 (13 HSPs)
chr4 (73-164)||(5183608-5183699)
chr4 (60-164)||(5197007-5197112)
chr4 (73-164)||(5174266-5174357)
chr4 (60-164)||(4841151-4841256)
chr4 (73-164)||(5161325-5161416)
chr4 (73-164)||(5215152-5215243)
chr4 (73-164)||(4855671-4855762)
chr4 (15-55)||(667924-667964)
chr4 (216-277)||(4848499-4848559)
chr4 (11-48)||(13567967-13568004)
chr4 (11-56)||(40976843-40976888)
chr4 (13-55)||(8847785-8847828)
chr4 (216-276)||(5199122-5199181)
[»] chr7 (7 HSPs)
chr7 (11-57)||(5222281-5222327)
chr7 (11-56)||(43364177-43364222)
chr7 (11-48)||(9701728-9701765)
chr7 (12-55)||(27950848-27950892)
chr7 (26-57)||(27954008-27954039)
chr7 (13-55)||(29865181-29865224)
chr7 (26-56)||(48455364-48455394)
[»] chr3 (7 HSPs)
chr3 (10-55)||(20628599-20628644)
chr3 (13-55)||(4501048-4501090)
chr3 (11-57)||(4506372-4506418)
chr3 (13-55)||(4644574-4644616)
chr3 (25-57)||(8049788-8049820)
chr3 (15-55)||(9331391-9331431)
chr3 (13-55)||(27900457-27900499)
[»] chr5 (6 HSPs)
chr5 (11-55)||(42729060-42729104)
chr5 (13-55)||(3413542-3413584)
chr5 (13-55)||(4694463-4694505)
chr5 (13-55)||(12919202-12919244)
chr5 (11-55)||(519696-519741)
chr5 (11-48)||(9335396-9335433)
[»] chr6 (3 HSPs)
chr6 (13-55)||(13105134-13105176)
chr6 (15-55)||(18765618-18765658)
chr6 (15-55)||(1051150-1051191)
[»] chr1 (5 HSPs)
chr1 (11-57)||(9315889-9315935)
chr1 (11-55)||(19329304-19329348)
chr1 (11-55)||(21814748-21814792)
chr1 (14-56)||(45620397-45620439)
chr1 (13-55)||(47293951-47293993)
[»] scaffold0012 (1 HSPs)
scaffold0012 (11-56)||(202330-202375)
[»] chr8 (7 HSPs)
chr8 (18-58)||(38657171-38657211)
chr8 (15-53)||(2268603-2268641)
chr8 (13-55)||(9907157-9907199)
chr8 (11-55)||(5064246-5064290)
chr8 (11-55)||(44246155-44246199)
chr8 (26-55)||(4435096-4435125)
chr8 (13-57)||(21693184-21693229)
[»] chr2 (1 HSPs)
chr2 (13-57)||(22599896-22599940)
[»] scaffold0265 (1 HSPs)
scaffold0265 (11-55)||(18017-18061)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 5183699 - 5183608
Alignment:
Q  73 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 164  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  5183699 attatgtgatagattcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatc 5183608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 5197112 - 5197007
Alignment:
Q  60 ggacctgacaatt-attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaat 158  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  5197112 ggacctgacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaat 5197013  T
Q  159 ccaatc 164  Q
    ||||||    
T  5197012 ccaatc 5197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 5174357 - 5174266
Alignment:
Q  73 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 164  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  5174357 attatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatc 5174266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 4841151 - 4841256
Alignment:
Q  60 ggacctgacaatt-attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaat 158  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| | ||||||||  || |||||||||||||    
T  4841151 ggacctgacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaat 4841250  T
Q  159 ccaatc 164  Q
    ||||||    
T  4841251 ccaatc 4841256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 5161416 - 5161325
Alignment:
Q  73 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 164  Q
    |||||||||||| |||||||||  || |||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  5161416 attatgtgataggttcaaggctaaaacttgttgcaggtgcccaatttgagaagggatagtacctgttagcttgttgcatgataaatccaatc 5161325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 5215243 - 5215152
Alignment:
Q  73 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 164  Q
    |||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||||||||| ||||||||| || || ||||||||||||||||    
T  5215243 attatgtgataggttcaaggctctaacttgttgaaggtgaccaatttgagaagggatgagacctgttaggttattccatgataaatccaatc 5215152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 4855671 - 4855762
Alignment:
Q  73 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 164  Q
    |||||||||||| ||||||||| ||| | |||| ||||  ||||||||||||||||||| ||||||||| || || ||||||||||||||||    
T  4855671 attatgtgataggttcaaggctctaactggttgaaggtgaccaatttgagaagggatgacacctgttaggttattccatgataaatccaatc 4855762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 667924 - 667964
Alignment:
Q  15 tggagacaataacaaaaatacttacttttgatactacatca 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  667924 tggagacaataacaaaaatacttacttttgatactacatca 667964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 4848499 - 4848559
Alignment:
Q  216 ctctcctaaaacattaaaacctgaatttattattggttattttggtttatataagaaaaaaa 277  Q
    |||| ||||||| ||||||||| ||||||||| |||||  ||||||||||||||||||||||    
T  4848499 ctcttctaaaacgttaaaacct-aatttattagtggttgatttggtttatataagaaaaaaa 4848559  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 13568004 - 13567967
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatac 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  13568004 cctgtggagataataacaaaaatacttacttttgatac 13567967  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 40976843 - 40976888
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatcaa 56  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||    
T  40976843 cctgtggagaagataacataaatacttacttttgatactacatcaa 40976888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 8847828 - 8847785
Alignment:
Q  13 tgtggagacaata-acaaaaatacttacttttgatactacatca 55  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  8847828 tgtggagacgatacacaaaaatacttacttttgatactacatca 8847785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 5199181 - 5199122
Alignment:
Q  216 ctctcctaaaacattaaaacctgaatttattattggttattttggtttatataagaaaaaa 276  Q
    |||| ||||||||||| ||||| |||||||||  ||||| ||| |||||||||||||||||    
T  5199181 ctcttctaaaacattacaacct-aatttattagaggttaattttgtttatataagaaaaaa 5199122  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 5222327 - 5222281
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatcaaa 57  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  5222327 cctgtggagacgataacaaaaatacttacttttgatactacatcaaa 5222281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 43364222 - 43364177
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatcaa 56  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  43364222 cctgtggagacgataacataaatacttacttttgatactacatcaa 43364177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 9701765 - 9701728
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatac 48  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9701765 cctgtggagataataacaaaaatacttacttttgatac 9701728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 27950892 - 27950848
Alignment:
Q  12 ctgtggagacaata-acaaaaatacttacttttgatactacatca 55  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||    
T  27950892 ctgtggaaacaatacacaaaaatacttacttttgatactacatca 27950848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 57
Target Start/End: Complemental strand, 27954039 - 27954008
Alignment:
Q  26 acaaaaatacttacttttgatactacatcaaa 57  Q
    ||||||||||||||||||||||||||||||||    
T  27954039 acaaaaatacttacttttgatactacatcaaa 27954008  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 29865181 - 29865224
Alignment:
Q  13 tgtggagacaata-acaaaaatacttacttttgatactacatca 55  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  29865181 tgtggagacgatacacaaaaatacttacttttgatactacatca 29865224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 48455394 - 48455364
Alignment:
Q  26 acaaaaatacttacttttgatactacatcaa 56  Q
    |||||||||||||||||||||||||||||||    
T  48455394 acaaaaatacttacttttgatactacatcaa 48455364  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 20628599 - 20628644
Alignment:
Q  10 acctgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  20628599 acctgtggagacgataacaaaaatacttacttttgatactacatca 20628644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 4501090 - 4501048
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  4501090 tgtggagacgataacaaaaatacttacttttgatactacatca 4501048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 4506418 - 4506372
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatcaaa 57  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  4506418 cctgtggagatgataacaaaaatacttacttttgatactacatcaaa 4506372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 4644574 - 4644616
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  4644574 tgtggagacgataacaaaaatacttacttttgatactacatca 4644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 8049820 - 8049788
Alignment:
Q  25 aacaaaaatacttacttttgatactacatcaaa 57  Q
    |||||||||||||||||||||||||||||||||    
T  8049820 aacaaaaatacttacttttgatactacatcaaa 8049788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 9331391 - 9331431
Alignment:
Q  15 tggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  9331391 tggagacgatgacaaaaatacttacttttgatactacatca 9331431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 27900499 - 27900457
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    |||||| || |||||| ||||||||||||||||||||||||||    
T  27900499 tgtggaaacgataacataaatacttacttttgatactacatca 27900457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 42729104 - 42729060
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  42729104 cctgtggagacgataacaaaaatacttacttttgatactacatca 42729060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 3413542 - 3413584
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  3413542 tgtggagacgatgacaaaaatacttacttttgatactacatca 3413584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 4694463 - 4694505
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  4694463 tgtgaagacgataacaaaaatacttacttttgatactacatca 4694505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 12919202 - 12919244
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  12919202 tgtggagacgataacgaaaatacttacttttgatactacatca 12919244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 519696 - 519741
Alignment:
Q  11 cctgtggagacaata-acaaaaatacttacttttgatactacatca 55  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||    
T  519696 cctgtggagactatacacaaaaatacttacttttaatactacatca 519741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 9335396 - 9335433
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatac 48  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  9335396 cctgtggagacgataacataaatacttacttttgatac 9335433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 13105176 - 13105134
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  13105176 tgtggagacgataacaaaaatacttacttttgatactacatca 13105134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 18765658 - 18765618
Alignment:
Q  15 tggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  18765658 tggagacgataacagaaatacttacttttgatactacatca 18765618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 1051191 - 1051150
Alignment:
Q  15 tggagacaataacaaaaa-tacttacttttgatactacatca 55  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  1051191 tggagacgataacaaaaaatacttacttttgatactacatca 1051150  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 9315935 - 9315889
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatcaaa 57  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  9315935 cctgtggagacgataacataaatacttacttttgatactacatcaaa 9315889  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 19329348 - 19329304
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||    
T  19329348 cctgtggagacgatagcaaaaatacttacttttgatactacatca 19329304  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 21814792 - 21814748
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||    
T  21814792 cctgtggagacgataactaaaaaacttacttttgatactacatca 21814748  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 45620397 - 45620439
Alignment:
Q  14 gtggagacaataacaaaaatacttacttttgatactacatcaa 56  Q
    |||||||  ||||||||||||||||||||| ||||||||||||    
T  45620397 gtggagatgataacaaaaatacttacttttaatactacatcaa 45620439  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 47293993 - 47293951
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||| |||||||||||| |||||||| |||||||||||    
T  47293993 tgtggagacgataacaaaaatatttacttttaatactacatca 47293951  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 202375 - 202330
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatcaa 56  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  202375 cctgtggagacgataacataaatacttacttttgatactacatcaa 202330  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 38657211 - 38657171
Alignment:
Q  18 agacaataacaaaaatacttacttttgatactacatcaaat 58  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  38657211 agacaataacaaaaatacttacttttaatactacatcaaat 38657171  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 2268603 - 2268641
Alignment:
Q  15 tggagacaataacaaaaatacttacttttgatactacat 53  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  2268603 tggagacgataacaaaaatacttacttttgatactacat 2268641  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 9907157 - 9907199
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  9907157 tgtggagacgataacaaaaatacttacttttgatacaacatca 9907199  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 5064246 - 5064290
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||    
T  5064246 cctgtgaagacgataacaaaaatacttacttttgatattacatca 5064290  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 44246155 - 44246199
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  44246155 cctgtggagacgataacataaatacttacttttgatactatatca 44246199  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 4435125 - 4435096
Alignment:
Q  26 acaaaaatacttacttttgatactacatca 55  Q
    ||||||||||||||||||||||||||||||    
T  4435125 acaaaaatacttacttttgatactacatca 4435096  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21693184 - 21693229
Alignment:
Q  13 tgtggagacaata-acaaaaatacttacttttgatactacatcaaa 57  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||    
T  21693184 tgtggagacgatacacaaaaatacttacttttgatattacatcaaa 21693229  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 22599940 - 22599896
Alignment:
Q  13 tgtggagacaataacaaaaatacttacttttgatactacatcaaa 57  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  22599940 tgtggagacgataacaaaaatacttacttttgataatacatcaaa 22599896  T

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Target: scaffold0265 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18017 - 18061
Alignment:
Q  11 cctgtggagacaataacaaaaatacttacttttgatactacatca 55  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||    
T  18017 cctgtggagacgataactaaaaaacttacttttgatactacatca 18061  T

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