View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12197_low_2 (Length: 485)
Name: NF12197_low_2
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12197_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1855103 - 1855333
Alignment:
| Q |
1 |
aaacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgtt |
100 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1855103 |
aaacaagtcctaccaggctgcaattacacctgtggaggtgtaaaagttccatatccatttggcataggaaattcaacagcacaagatcatacaccatgtt |
1855202 |
T |
|
| Q |
101 |
acataaattccaaatttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatgga |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855203 |
acataaattccaaatttatgctcacttgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatgga |
1855302 |
T |
|
| Q |
201 |
aatgagatttttcgtctcacgtctctgtacg |
231 |
Q |
| |
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|||||||||||||||||||| |||||||||| |
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| T |
1855303 |
aatgagatttttcgtctcacatctctgtacg |
1855333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 266 - 472
Target Start/End: Original strand, 1855362 - 1855568
Alignment:
| Q |
266 |
ccgaaaaagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatct |
365 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagtttcttccctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagtttcggatatct |
1855461 |
T |
|
| Q |
366 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgc |
465 |
Q |
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| T |
1855462 |
caacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgc |
1855561 |
T |
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| Q |
466 |
acaggtt |
472 |
Q |
| |
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||||||| |
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| T |
1855562 |
acaggtt |
1855568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 272 - 472
Target Start/End: Complemental strand, 1817823 - 1817623
Alignment:
| Q |
272 |
aagcaaataaaccttctctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacag |
371 |
Q |
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||||||||| | ||| ||||| ||||||| ||| | |||||||||| || || |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
1817823 |
aagcaaatagagcttatctcatagtttctcctcacacaatttcaagtacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacag |
1817724 |
T |
|
| Q |
372 |
taatttcaagggtgccacttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggt |
471 |
Q |
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|||||||| |||| ||||||||| ||||| |||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
1817723 |
taatttcacaggtggcacttattcaacagggtgcttaacaagatgttatgattttaaacctaaaatagtaattgggaataacactggaaaatgcacaggt |
1817624 |
T |
|
| Q |
472 |
t |
472 |
Q |
| |
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| |
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| T |
1817623 |
t |
1817623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1818085 - 1817866
Alignment:
| Q |
1 |
aaacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgtt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
1818085 |
aaacaagtcctaccaggctgcaattacacctgtggagatttaacaattccatatccatttggcataggaaattcaacagcacaacatcatacaccatgtt |
1817986 |
T |
|
| Q |
101 |
acataaattccaaatttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatgga |
200 |
Q |
| |
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|||| |||| |||||| |||| ||| | |||| || ||||||||| || | ||| ||||||| ||||||||||||||||||||| |||| |
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| T |
1817985 |
acatggattcaaaatttgaactcacctgtgtaaacaactcaaaattaattcggcctaggggtatcgaagtcctggacataaatccccaaggtcaagtgga |
1817886 |
T |
|
| Q |
201 |
aatgagatttttcgtctcac |
220 |
Q |
| |
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||||| ||||| ||||||| |
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| T |
1817885 |
aatgaaattttcagtctcac |
1817866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 1845015 - 1844913
Alignment:
| Q |
2 |
aacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgtta |
101 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1845015 |
aacaagtcctacctggctgcaactatacttgtggagatataaacattccatatccatttggcataggaaattcaacaacacaagatcatacaccatttta |
1844916 |
T |
|
| Q |
102 |
cat |
104 |
Q |
| |
|
||| |
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|
| T |
1844915 |
cat |
1844913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 9220619 - 9220511
Alignment:
| Q |
313 |
tcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaa |
412 |
Q |
| |
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|||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||||| || ||| | | || ||||| || || |||||||||| |
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| T |
9220619 |
tcaagcactgaaaacaagttcataacggttggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaa |
9220520 |
T |
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| Q |
413 |
gatgttatg |
421 |
Q |
| |
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||||||||| |
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| T |
9220519 |
gatgttatg |
9220511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 9158157 - 9158110
Alignment:
| Q |
325 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagt |
372 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
9158157 |
aacaagttcgtaacggttggttgtgacagttacggttatctcaacagt |
9158110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 288 - 470
Target Start/End: Original strand, 37566852 - 37567041
Alignment:
| Q |
288 |
tctcagagtttcttctctcgcaatttcaagcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgcc |
387 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37566852 |
tctcagagttccttctctcacaatttcaagcacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcaagggtgcc |
37566951 |
T |
|
| Q |
388 |
acttattctacaggatgc-------ttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacagg |
470 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||| |
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| T |
37566952 |
acttattctacaggatgcttaacagttaacaagatgttatgattttgatcctaaaatggtaactgggaataacactggaaaatgcacagg |
37567041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 37566744 - 37566845
Alignment:
| Q |
115 |
tttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcg |
214 |
Q |
| |
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|||| ||||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
37566744 |
tttaagctcacttgtacaaacaactccaaattaatccgtggtaagaatctacaagtcctagacataaatccgcacggtcaaatggaaatgaaatttttcg |
37566843 |
T |
|
| Q |
215 |
tc |
216 |
Q |
| |
|
|| |
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|
| T |
37566844 |
tc |
37566845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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