View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12197_low_7 (Length: 330)
Name: NF12197_low_7
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12197_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 7230592 - 7230908
Alignment:
| Q |
1 |
tgaatcgattcagaagatttcaaaatattttgatttgagtcaacatgatacaaatcatagtgtacatgaaacgattcacgttgtcatgaacaacaagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7230592 |
tgaatcgattcagaagatttcaaaatattttgattcgagtcaacatgataaaaatcatagtgtacatgaaacgattcatgttgtcatgaacaacaagaaa |
7230691 |
T |
|
| Q |
101 |
caataccagaagatgtcaatgaatcgattcatgattccattcaaagactttgaaaaagagtttcgcgag--nnnnnnncttgacacacaagacactttga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7230692 |
caataccagaagatgtcaatgaatcgatttatgattccattcaaagactttgaaaaagagtttcgcgagaaaaaaaaacttgacacacaagacactttga |
7230791 |
T |
|
| Q |
199 |
ggaaagctaagaccatggatgactagctgctttaacacacatgctaactaatttgaatatgtaaacactgcacgataaacatcattaaaacacttaatgc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
7230792 |
ggaaagctaagaccatggatgactagctgctttaacatacgtgctaactaatttgaatatgtaaactctgcacgataaacatcattaaaatacttagtgc |
7230891 |
T |
|
| Q |
299 |
ctaatctagtcaaacat |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7230892 |
ataatctagtcaaacat |
7230908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 27236660 - 27236600
Alignment:
| Q |
18 |
tttcaaaatattttgatttgagtcaacatgatacaaatcatagtgtacatgaaacgattca |
78 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
27236660 |
tttcaaaatattttgatttgaatcaatatgatacgcatcatggtgtacatgaaacaattca |
27236600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 22916990 - 22916934
Alignment:
| Q |
177 |
cttgacacacaagacactttgaggaaagctaagaccatggatgactagctgctttaa |
233 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||| |||| |||||||| |
|
|
| T |
22916990 |
cttgacacacaagacactttgaagaaacttaagatcatggatggctagatgctttaa |
22916934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 8363134 - 8363076
Alignment:
| Q |
177 |
cttgacacacaagacactttgaggaaagctaagaccatggatgactagctgctttaaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| |||| |||||||||| |
|
|
| T |
8363134 |
cttgacacacaagacactttgaggaaccctaagagtatggattgctaggtgctttaaca |
8363076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University