View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12197_low_8 (Length: 259)

Name: NF12197_low_8
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12197_low_8
NF12197_low_8
[»] chr1 (2 HSPs)
chr1 (82-256)||(27959588-27959764)
chr1 (22-61)||(27959898-27959937)


Alignment Details
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 27959764 - 27959588
Alignment:
Q  82 tattattgatgtaaatagagtataacgaatcatcatgtatatattatatatgatcatatacaatttcaagtggcagcaaaaggcttaatcaattataa-- 179  Q
    ||||||||||||||| ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||      
T  27959764 tattattgatgtaaagagagtataacgaatcatcatgtatatat---------------acaatttcaagtggcagcaaaaggcttaatcaattataaaa 27959680  T
Q  180 --ctct---------tctatcataggaagttaggaacatctatctat----aatgtacttgtatctttgttgcacctttgtttagtgttctt 256  Q
      || |         ||||||||||||| | ||||||||||||||||    ||||||||||||||||||||||| |||||||||||| ||||    
T  27959679 tactataattatacgtctatcataggaaatcaggaacatctatctatctataatgtacttgtatctttgttgcatctttgtttagtgctctt 27959588  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 27959937 - 27959898
Alignment:
Q  22 gcatatatcacatgggtctggtttagtgtttcatgaagat 61  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  27959937 gcatatatcatatgggtctggtttagtgtttcatgaagat 27959898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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