View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12197_low_9 (Length: 239)
Name: NF12197_low_9
Description: NF12197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12197_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 44103358 - 44103577
Alignment:
| Q |
2 |
caacgataaagaaatgatcgagaatgaaaggttagatgagaaagagtaatacaaaccctagcagagcgatgaagaaagagactatcgatgaagctatgga |
101 |
Q |
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| T |
44103358 |
caacgataaagaaatgatcgagaatgaaaggttagatgagaaagaataatacaaaccctagcagagcgatgaagaaagagactatcgatgaagctatgga |
44103457 |
T |
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| Q |
102 |
ctcgaaagcgaaagggttttgaagaatggcggtgaaagttcgtttggttc-tttctctctattttctactcgtggctcgttttggttgggttagtcagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44103458 |
ctcgaaagcgaaagggttttgaagaatggcggtgaaagttcgtttggttcttttctctctattttctactcgtggctcgttttggttgggtaagtcagat |
44103557 |
T |
|
| Q |
201 |
atatatatggtggactcgac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
44103558 |
atatatatggtggactcgac |
44103577 |
T |
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