View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12198_high_2 (Length: 336)
Name: NF12198_high_2
Description: NF12198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12198_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 19095404 - 19095164
Alignment:
| Q |
12 |
atgaagtctggagaatcagagtctttaagtaaaagaatgcatcaaatgtcgatgatccattaccagatcaggtaaagaatttttattgttcttatatttc |
111 |
Q |
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| T |
19095404 |
atgaagtctggagaatcagagtctttaagtaaaagaatgcatcaaatgtcggtggtccattaccagatcaggtaaagaatttttattgttcttatatttc |
19095305 |
T |
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| Q |
112 |
agtgagacttgttattttgttgtagaattctattttacaagttcgttgcttaaagacaaggaaaaagttcaactatggagattagataatagtttgtcat |
211 |
Q |
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| T |
19095304 |
agtgagacttgttattttgttgtagaattctattttacaagttcgttgcttaaagacaaggaaaaatttcaactatggagcttagatgatagtttgtcat |
19095205 |
T |
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| Q |
212 |
atagttgttttagcatcatttaggagatagttttaaatctt |
252 |
Q |
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| T |
19095204 |
atagttgttttagcttcatttaggagatagttttaaatctt |
19095164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 19095131 - 19095074
Alignment:
| Q |
279 |
ggttgagtatttgtaaataaaccaatggacacgcaagggacaagaaaaatgaaaacaa |
336 |
Q |
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| T |
19095131 |
ggttgagtatttgtaaataaaccaatggacacgcaagggacaagaaaaatgaaaacaa |
19095074 |
T |
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