View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12198_high_8 (Length: 309)
Name: NF12198_high_8
Description: NF12198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12198_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 43316951 - 43317134
Alignment:
| Q |
1 |
gttatgatcctccctattgttttaaaaaataattagttgagattaattatttaattctcaaacggtggctactggctactgtgaaggttgattgattatg |
100 |
Q |
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| T |
43316951 |
gttataatcctccctattgttttaaaaaataattagttgagattaattaattaattctcaaatggtggctactggctactgtgaaggttgattgattatg |
43317050 |
T |
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| Q |
101 |
------------aatcaaaacttggtagtcaggtcaagcatcacttgtactagcatgagaaaatgcatctttatacagtagtac |
172 |
Q |
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| T |
43317051 |
aataaaaatattaatcaaaacttggtagtcaagtcaagcatcacttgtactagcatgagaaaatgcatctttatacagtagtac |
43317134 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 43317194 - 43317251
Alignment:
| Q |
237 |
aagacttatccacaaaagaaaatttgttcaaatattttagattcttcgtttctagaat |
294 |
Q |
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| T |
43317194 |
aagacttatcaacaaaagaaaatttgttcaaagattttagattcttcgtttctagaat |
43317251 |
T |
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