View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_high_2 (Length: 382)
Name: NF12199_high_2
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 44697865 - 44697506
Alignment:
| Q |
18 |
aaacccctatatagcatgtgcatcttggtaatttcttatggaaatgactttattcactcactaaaaatcataatgtgacagttacctcaaaaatggggaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44697865 |
aaacccctatatagcatgtgcatcttggtaatttcttatggaaatgactttattcactcactaaaaatcataatgtgacagttacctcaaaaatggggaa |
44697766 |
T |
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| Q |
118 |
agtaatgttcccgtaccacaatgcaactactcaacttagcatcaaccctaccatcataattacacataaagtgataactcaagacatcaacctcattctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44697765 |
agtaatgttcccgtaccacaatgcaactactcaacttagcatcaaccctaccatcataattacacataaagtgataactcaagacatcaacctcattctt |
44697666 |
T |
|
| Q |
218 |
cccatgaccttaagatgactatgacttactcatttatgctctcaaaatttacatgacttactagccacaaccttctcatcctttggtttcttcatagtac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44697665 |
cccatgaccttaagatgactatgacttactcatttatgctctcaaaatttacatgacttactagccacaaccttctcatcctttggtttcttcatagtac |
44697566 |
T |
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| Q |
318 |
atttcctcttatgccttctttagtctaaaaagatagcattcttacatagtctctgcttct |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
44697565 |
atttcctcttatgccttctttagtctaaaaagatagcattcttacatagtttctgtttct |
44697506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 36325463 - 36325434
Alignment:
| Q |
23 |
cctatatagcatgtgcatcttggtaatttc |
52 |
Q |
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| T |
36325463 |
cctatatagcatgtgcatcttggtaatttc |
36325434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 54725373 - 54725402
Alignment:
| Q |
23 |
cctatatagcatgtgcatcttggtaatttc |
52 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
54725373 |
cctatatagcatgtgcatcttggtaatttc |
54725402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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