View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_high_3 (Length: 361)
Name: NF12199_high_3
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 37 - 348
Target Start/End: Complemental strand, 3587101 - 3586790
Alignment:
| Q |
37 |
tgtatttaaactcttggcaaccgaatacaggttctttataaggctaaggataagactgctaacacgaattaattgaaccttatacctataacccaccgca |
136 |
Q |
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| T |
3587101 |
tgtatttaaacttttagcaaccgaatacaggttctttataaggctaaggataagactgctaacacgaattaattgaaccttatacctataacccaccgca |
3587002 |
T |
|
| Q |
137 |
catcaatgaaacaataagcattccacgaccattttagcccagagattgtagcgaatgacttagataaaatacaaatcataccgtaacggtttgagaacgc |
236 |
Q |
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| T |
3587001 |
catcaatgaaacaataagcattccacgaccattttagcccagagattgtagcgaacgacttagataaaatacaaatcataccgtaacggtttgagaacac |
3586902 |
T |
|
| Q |
237 |
ccaaacctgaactagttttaaagggaagtcaattattgaagaccatcgacaactgaagcaaacacatatacccctagtgatgagcttatcgaaagcatat |
336 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3586901 |
ccaaacctgaactagttttaaagggaagtcaatttttgaggaccatcgacaactgaagcaaacacatatacccctagtgatgagcttatcgaaagcatat |
3586802 |
T |
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| Q |
337 |
atgaagagcaca |
348 |
Q |
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|||||||||||| |
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| T |
3586801 |
atgaagagcaca |
3586790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 348
Target Start/End: Original strand, 9990138 - 9990287
Alignment:
| Q |
199 |
gataaaatacaaatcataccgtaacggtttgagaacgcccaaacctgaactagttttaaagggaagtcaat-tattgaagaccatcgacaactgaagcaa |
297 |
Q |
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||||||| ||||| |||||| || ||||||| ||| || ||| ||| ||||||||||||||||||||| | ||| ||||| ||||| ||| |||| |
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| T |
9990138 |
gataaaacacaaaacataccagaaaggtttgataacacctaaagacgaattagttttaaagggaagtcaatgtcttgtggaccacagacaattgacgcaa |
9990237 |
T |
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| Q |
298 |
acacatatacccctagtgatgagcttatcgaaagcatatatgaagagcaca |
348 |
Q |
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| T |
9990238 |
gcacatatacccctggtga-gaccttatcgaaagcatatctgaagagcaca |
9990287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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