View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_low_1 (Length: 578)
Name: NF12199_low_1
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 578
Target Start/End: Complemental strand, 35006241 - 35005680
Alignment:
| Q |
17 |
gacatcaaaagagctgtaaactagaggaatttctttaaagcactcagtgaacgtcacacagcctacacaaagtgcaaacatagcacatggcatgtacaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35006241 |
gacatcaaaagagctgtaaactagaggaatttctttaaagcactcagtgaacgtcacacagcctacacaaagtgcaaacatagcacacggcatgtacaaa |
35006142 |
T |
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| Q |
117 |
agtattcgctcattcgatgttgaatatccctgcacaataaggaacagaaaactgaagcaaatgcctatatattattgtaagttatagtgtatgtgaacat |
216 |
Q |
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| T |
35006141 |
agaattcgctcattcgatgaggaatatccctgcacaataaggaacagaaaactgaagcaaatgcctatatattattgtaagttatagtgtatgtgaacat |
35006042 |
T |
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| Q |
217 |
aatgctattacatattagtgcaagtgtataatatcgtaatactaaatcaacgggtagtggtgcccttttannnnnnnnggatggcgaatataacatattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
35006041 |
aatgctattacatattagtgcaagtgtataatatcgtaatactaaatcaacgggtagtggtgcccttttattttttttggatggcgaatataacatatcg |
35005942 |
T |
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| Q |
317 |
atagaaaggcaaaacacgcagaaaagtacaatggcaagccttcagnnnnnnnnnnnnnnnggcctacccatgaaccaccgacagaaaggnnnnnnncaaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |
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| T |
35005941 |
atagaaaggcaaaacacgcagaaaagtacaatggcaagccttcagaaaaaagctaaaaaaggcctacccacgaaccaccgacagaaaggaaaaaaacaaa |
35005842 |
T |
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| Q |
417 |
gcacaagtacaaaccaagaagccaaaactaaaacggcacccctaggaacatccacaacaaaagcactccaaaagctccaccccgccagcactaccagaag |
516 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
35005841 |
gcacaagaacaaaccaagaagccaaaactaaaatggcacccctaggaacatccacaacaaaagcactccaaaacctcccccccgccagcactaccagaag |
35005742 |
T |
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| Q |
517 |
cagcaaagccaagagaaaaccaccaagcagaaggaccgcagaaatctagggcccacccaaac |
578 |
Q |
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| T |
35005741 |
cagcaaagccaagagaaaaccaccaagcagaaggaccgcagaaatctagggcccacccaaac |
35005680 |
T |
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