View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_low_10 (Length: 338)
Name: NF12199_low_10
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 25524723 - 25524407
Alignment:
| Q |
20 |
ttcctgtcttctataaacaaagaggcaatttattttatccggcatgggcatggacattgtccacatggattcttcaatttccttattccattgttgaatc |
119 |
Q |
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| T |
25524723 |
ttcctgtcttctataaacaaagaggcaatttattttatccggcatgggcatggacactgtccacatggattcttcaatttccttattccattgttgaatc |
25524624 |
T |
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| Q |
120 |
tgttgcatggactggtgtcgtgtactacattattggatttgctcctgcacctgggaggtattttactttacattcatatactgtcttatgacnnnnnnnn |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25524623 |
tgttgcgtggactggtgtcgtgtactacattattggatttgctcctgcacctgggaggtattttactttacattcatatactctcttatgac-ttttttt |
25524525 |
T |
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| Q |
220 |
ctgtcttcttttaaaactcatacatactcttggcattccggttaatatttcaggttcttccgctacatgcttttattgcttatggtgcaccaaatggcat |
319 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524524 |
ctgtcttctttt-aaactaatacatactcttggcattccggttaatatttcaggttcttccgctacatgcttttattgcttatggtgcaccaaatggcat |
25524426 |
T |
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| Q |
320 |
taggtctctttcggctcac |
338 |
Q |
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||||||||||||||||||| |
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| T |
25524425 |
taggtctctttcggctcac |
25524407 |
T |
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