View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_low_11 (Length: 298)
Name: NF12199_low_11
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 62392 - 62658
Alignment:
| Q |
19 |
catatccctggtgtttcccagagctctttgccaaaaaagaaaattggatccattttgtcagtcatgttgttgcacacttggacgcaagacttgttttgat |
118 |
Q |
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| T |
62392 |
catatccctggtgtttcccagagctctttgccaaaaaagaaaattggatccatattgtcagtcatgttgttgcacacttggacgcaagacttgttttgat |
62491 |
T |
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| Q |
119 |
ttgttatgggagttatcgtgagaggaaagtgaagagaaatagctctatgaaaacttaatagtttacccacttcatgaacattattgaatgccaaatgtag |
218 |
Q |
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| T |
62492 |
ttgttatgggagttatcgtgagaggaaagtgaagagaaatagctctatgaaaacttaatagtttacccacttcatgaacattattgaatgccaaatgtag |
62591 |
T |
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| Q |
219 |
tttcaattatataaactaataattatttgtttccttcacgtagaacccacaaatgttaacagcacag |
285 |
Q |
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| T |
62592 |
tttcaattatataaactaataattatttgtttccttcacgtagaacccacaaatgttaacagcacag |
62658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 111779 - 111936
Alignment:
| Q |
91 |
cacacttggacgcaagacttgttttgatttgttatgggagttatcgtgagaggaaagtgaagagaaatagctctatgaaaacttaatagtttacccactt |
190 |
Q |
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|||| |||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
111779 |
cacaattggacgcaagactagttttgatttgttctaggagttatcatgagaggaaagtgaagagaaatagctctatagaaacttaatagtttacccgttt |
111878 |
T |
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| Q |
191 |
catgaacattattgaatgccaaatgtagtttcaattatataaactaataattatttgt |
248 |
Q |
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| T |
111879 |
catgaacattattgaatgccaaatgtagtttcaattatataaactaataattatttgt |
111936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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