View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_low_2 (Length: 449)
Name: NF12199_low_2
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 6732680 - 6732267
Alignment:
| Q |
9 |
agcagagatgtttagtacaaaacaataaataaaacgtgaacgcggaacaagtacgacaaaaccaagaaactacaacgaaatgtaggcaaaggtaaagtgg |
108 |
Q |
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| T |
6732680 |
agcagaaatgtttagtacaaaacaataaataaaacgtgaacgcggaactagtacgacaaaaccaagaaactacaacgaaatgtaggcaaaggtaaagtgg |
6732581 |
T |
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| Q |
109 |
ggtaaaatgaataccaaaaatcacaatctctatctataaataacttgagttcatgagttttctttctcatccaatgctagaaaacatttgtttgattcca |
208 |
Q |
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| T |
6732580 |
ggtaaaatgaagaccaaaaatcacaatctctatctataaataacttgagttgatgagttttttttttct--caaaac----atacatttgtttgattcca |
6732487 |
T |
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| Q |
209 |
caaaaacaacaaaacacattattacttgcatagttatggctgagctagtgggtggagctgttgttggagctgtggtgggagaggctctgaaatacccaat |
308 |
Q |
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| T |
6732486 |
caaaaacaacaaaacacattattacttgcacagttatgggtgatctagtgggtggagctgtcgttggagctgtggtgggagaggctctgaaatacccaat |
6732387 |
T |
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| Q |
309 |
tgaagcattcaacagaggtcgaaagtacccttccactctcgaaagaggcagaaaaacttgcaatgctttggctcctctggttgaagagataataatttgc |
408 |
Q |
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| T |
6732386 |
tgaagcattcaacagaggtcgaaagtacccttccactctcgaaagaggcagaaaaacttgcaatgctttggctcctctggttgaagagataattgtttgc |
6732287 |
T |
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| Q |
409 |
aacgattcgttgggtcgacc |
428 |
Q |
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| T |
6732286 |
aacgattcgttgggtcgacc |
6732267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 6763561 - 6763494
Alignment:
| Q |
141 |
tctataaataacttgagttcatgagttttctttctcatccaatgctagaaaacatttgtttgattccac |
209 |
Q |
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| T |
6763561 |
tctataaataacttgagttcatgtgttttctt-ctcatccaatgctagaaaacatttgtttgattccac |
6763494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 6762964 - 6762904
Alignment:
| Q |
141 |
tctataaataacttgagttcatgagttttctttctcatccaatgc---tagaaaacatttg |
198 |
Q |
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|||||||||||||||||||||| |||||| |||||||||| |||| ||||||||||||| |
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| T |
6762964 |
tctataaataacttgagttcattagttttttttctcatccgatgctcgtagaaaacatttg |
6762904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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