View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_low_3 (Length: 411)
Name: NF12199_low_3
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 107 - 394
Target Start/End: Complemental strand, 51766507 - 51766220
Alignment:
| Q |
107 |
caaacgacggggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgc |
206 |
Q |
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| T |
51766507 |
caaacgacggggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgc |
51766408 |
T |
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| Q |
207 |
tttctgtagtgacaaatccatcaaaatttcttcctcgaatggagaattgattagagttcactataaggtctctattccacatgaaaagatacaacaagtc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51766407 |
tttctgtagtgacaaatccatcaaaatttcttcctcgaatggagaattgattagagttcactataaggtctctattccacttgaaaagatacaacaagtc |
51766308 |
T |
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| Q |
307 |
aaccaaagtcaaaatatgaagaaaccgtcagaaaaatacatagaaatagtcactgtggatggtttcgacttctggtttatgggtttct |
394 |
Q |
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| T |
51766307 |
aaccaaagtcaaaatatgatgaaaccgtcagaaaaatacatagaaatagtcactgtggatggtttcgacttctggtttatgggtttct |
51766220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 51753833 - 51753572
Alignment:
| Q |
14 |
agataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagagaaagtatttatgcaactttttaatgcaaacga |
113 |
Q |
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| T |
51753833 |
agataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatggaactttttagtgttaaaga |
51753734 |
T |
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| Q |
114 |
cggggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgctttctgt |
213 |
Q |
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| T |
51753733 |
tggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcatttccactcacaaagttgctttttgt |
51753634 |
T |
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| Q |
214 |
agtgacaaatccatcaaaatttcttcctcgaatggagaattgattagagttcactataaggt |
275 |
Q |
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||||| ||||||||||| || ||||| | || |||||||||| |||||||| ||||||||| |
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| T |
51753633 |
agtgagaaatccatcaagatctcttcaccaaaaggagaattgagtagagttcgctataaggt |
51753572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 272 - 394
Target Start/End: Complemental strand, 51753460 - 51753338
Alignment:
| Q |
272 |
aggtctctattccacatgaaaagatacaacaagtcaaccaaagtcaaaatatgaagaaaccgtcagaaaaatacatagaaatagtcactgtggatggttt |
371 |
Q |
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|||| |||||||||||||||||||| || || |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||||||| |
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| T |
51753460 |
aggtatctattccacatgaaaagattcagcatgtcaaccaaagtcaaaatgtgaagaaaccttcagaaaaatacatagaaatagtcaccgtagatggttt |
51753361 |
T |
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| Q |
372 |
cgacttctggtttatgggtttct |
394 |
Q |
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| T |
51753360 |
cgacttctggtttatgggtttct |
51753338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 12196347 - 12196124
Alignment:
| Q |
16 |
ataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagagaaagtatttatgcaactttttaatgcaaacgacg |
115 |
Q |
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||||| |||||||| ||||| || |||| || ||||| ||||||||||| ||||| ||||| || || || || |||||||| |||| || ||| || | |
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| T |
12196347 |
ataaccgatacagtgaaaggaaagctgagcttaggagctagaattcttcaagttggaggagtggaaaaggtgttcatgcaactatttagtgtaaaagatg |
12196248 |
T |
|
| Q |
116 |
gggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgctttctgtag |
215 |
Q |
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| |||| ||| | ||||||||||| ||||| |||||||| ||||| |||| | |||| ||||| |||||||| || ||| | |||||||| || ||||| |
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| T |
12196247 |
gagagaggctactaaaagcatctcaatgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtag |
12196148 |
T |
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| Q |
216 |
tgacaaatccatcaaaatttcttc |
239 |
Q |
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||| | ||| || ||||| ||||| |
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| T |
12196147 |
tgagagatcaattaaaatctcttc |
12196124 |
T |
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