View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12199_low_7 (Length: 350)
Name: NF12199_low_7
Description: NF12199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12199_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 40086065 - 40085730
Alignment:
| Q |
1 |
gatgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattgacaaatataaactttgaccttaatatcttcaagaatatattaa |
100 |
Q |
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| T |
40086065 |
gatgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattaacaaatataaactttgaccttaatatcttcaagaatatattaa |
40085966 |
T |
|
| Q |
101 |
ctatacttgtattgtatttcatgataaaaaa-cctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttcatgaggtcgacaatc |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40085965 |
ctatacttgtattgtatttcatgataaaaaaacctgagataaaattataggtcctccttgtgatgcatacagtttctcttgcttcatgaggtcgacaatc |
40085866 |
T |
|
| Q |
200 |
ttagtggtgaatcgcttcatttcagcctgaagacaaagtttactgtcaagtgaactcagtccaaggaaaaaagcatgaagcactggactgaaggttaact |
299 |
Q |
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| T |
40085865 |
ttagtggtgaatcgcttcatttcaacctgaagacaaagtttcctgtcaagtgaactcagtccaaggacaaaagcatgaagcactggactgaaggttaact |
40085766 |
T |
|
| Q |
300 |
tgccttaaatggttcattgtcagttcggaacttaat |
335 |
Q |
| |
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| T |
40085765 |
taccttaaatggttcattgtcagttcggaacttaat |
40085730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 2 - 335
Target Start/End: Complemental strand, 40078268 - 40077925
Alignment:
| Q |
2 |
atgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattgacaaatataaactttgaccttaatatcttcaagaatatattaac |
101 |
Q |
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|||| ||||||||||||||| ||||| ||||||||| |||||| ||||||||||| |||||||| | || |||||||||||||| ||| ||||||||||| |
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| T |
40078268 |
atgtttccatactcattttcaatctggcattagaaagcacaaatactctcacattaacaaatatgagctctgaccttaatatctacaaaaatatattaac |
40078169 |
T |
|
| Q |
102 |
tata--cttgtat-------tgtatttcatgataaaaaacctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttcatgaggtc |
192 |
Q |
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| T |
40078168 |
tatatacttcaaaaagaccatgtatttaatgattaaaaacctgagataaaattataggtcctccttgtgatgcatacagtttctcttgcttcatgagatc |
40078069 |
T |
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| Q |
193 |
gacaatcttagtggtgaatcgcttcatttcagcctgaagacaaagtttactgtcaagtgaactcag-tccaaggaaaaaagcatgaagcactggactgaa |
291 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||| ||| |||||||||| | |||| |
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| T |
40078068 |
gacaatcttagcggtgaatcgcttcatttcggcctgaagacaaagtttcctgtcaagtgaactcagatttaaggacaaatgcatgaagcaacagggtgaa |
40077969 |
T |
|
| Q |
292 |
ggttaacttgccttaaatggttcattgtcagttcggaacttaat |
335 |
Q |
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| T |
40077968 |
ggttagcctaccttaaatggttcattgtcagttcggaacttaat |
40077925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 40060177 - 40059845
Alignment:
| Q |
1 |
gatgtctccatactcattttctatctgtcattagaaatcacaaacactctcacattgacaaatataaactttgaccttaatat--cttcaagaatatatt |
98 |
Q |
| |
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||||||||||||||||||||| ||||| || |||| |||||| ||||||||||| |||||||| ||||||||||||||||| || ||| |||||| | |
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| T |
40060177 |
gatgtctccatactcattttcaatctggcaatagag--cacaaatactctcacattaacaaatattaactttgaccttaatatgtctacaaaaatatact |
40060080 |
T |
|
| Q |
99 |
aactatacttgtattgtatttcatgataaaaaa-cctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttcatgaggtcgacaa |
197 |
Q |
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||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
40060079 |
cgctata-----attgtatttagtgataaaaaaacctgagataaaattataggtcctccttgtgatgcataaagtttctcttgcttcatgagatcgacaa |
40059985 |
T |
|
| Q |
198 |
tcttagtggtgaatcgcttcatttcagcctgaagacaaagtttactgtcaagtgaactcag-tccaaggaaaaaagcatgaagcactggactgaaggtta |
296 |
Q |
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|||||| |||||||| ||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||| | |||||| || | | ||||| |
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| T |
40059984 |
tcttagcggtgaatctcttcatttcggcctgaagacaaaatttcttggcaagtgaactcagatttaaggacaaaagtaggaagcaacagagttatggtta |
40059885 |
T |
|
| Q |
297 |
act-tgccttaaatggttcattgtcagttcggaacttaat |
335 |
Q |
| |
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|| | |||||||||||||||| ||||||||||||||||| |
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| T |
40059884 |
cctctaccttaaatggttcattatcagttcggaacttaat |
40059845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 22015577 - 22015666
Alignment:
| Q |
130 |
aacctgagataaaattataggtccgccttgtgatgtatacagtttctcttgcttcatgaggtcgacaatcttagtggtgaatcgcttcat |
219 |
Q |
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|||||||||||||||||||||||| |||||||||| ||| || |||||||||||||| | ||||||||||||| ||| || |||||||| |
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| T |
22015577 |
aacctgagataaaattataggtcctccttgtgatgcatagaggttctcttgcttcatcatatcgacaatcttagcggtaaaccgcttcat |
22015666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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