View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12200_low_10 (Length: 391)
Name: NF12200_low_10
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 38809541 - 38809167
Alignment:
| Q |
1 |
ttgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggattggtaaaaattaccaaacgtgctaaaagacacatctatgattgagatt |
100 |
Q |
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| T |
38809541 |
ttgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggatttgtaaaaattaccaaacgtgctaaaagacacatctatgattgagatt |
38809442 |
T |
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| Q |
101 |
ggttatagaattcaatgtatgtggatcacataatgtgctcagtgcctttggaaggccaccacataattcaaggactaatttttgtttggattattgttat |
200 |
Q |
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| T |
38809441 |
ggttatagaattcaatgtatgtggatcacataatgtgctcagtgcctttggaaggccaccacataattcaaggactaatttttgtttggattattattat |
38809342 |
T |
|
| Q |
201 |
tcataaagaaaatcaccctagttggtatatagttctaacgagacagattatgaggtcagaaggatcatgcatatcaagaggttttaccaaatgctaattt |
300 |
Q |
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| T |
38809341 |
tcataaagaaaatcaccctagttggtatatagttctaacgagacagattatgaggtcagaaggatcatgcatatcaagaggttttaccaaatgctaattt |
38809242 |
T |
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| Q |
301 |
agtcattatttatagt-atctaagagaaatttggatatagaaaaataaccatttgtcctaccggtgccacttgtt |
374 |
Q |
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| T |
38809241 |
aatcattatttatagtaatctaagagaaatttggatatagaaaaataaccatttgtcctaccggtgccacttgtt |
38809167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 38822365 - 38822260
Alignment:
| Q |
169 |
caaggactaatttttgtttggattattgttatt---cataaagaaaatcaccctagttggtatatagttctaacgagacagattatgaggtcagaaggat |
265 |
Q |
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| T |
38822365 |
caaggattaatttttgtttggattattattattattcataaagaaaatcacc-tagttggtatatatttctaacgacacagactatgaggtcagaaggat |
38822267 |
T |
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| Q |
266 |
catgcat |
272 |
Q |
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| T |
38822266 |
catgcat |
38822260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 38811612 - 38811491
Alignment:
| Q |
1 |
ttgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggattggtaaaaattaccaaacgtgctaaaagacacatc----tatgattga |
96 |
Q |
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||||||| ||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| ||||| |||| || || | ||| |||| || |
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| T |
38811612 |
ttgagctacaaaaaatgcatttatttggaaatttattcaatgttcaatggattggtaaaaattatcaaacttgctgaatgatatatccgtatatgtctgg |
38811513 |
T |
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| Q |
97 |
gattggttatagaattcaatgt |
118 |
Q |
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| T |
38811512 |
gattggttatagaattcaatgt |
38811491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 38822489 - 38822429
Alignment:
| Q |
9 |
caaaaaatgcacttaagtgaaaatttattcaaggttcaatggattggtaaaaattaccaaa |
69 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| || |||||||||||| |
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| T |
38822489 |
caaaaaatgcacttatttggaaatttattcaaggttcaatggattagtgaaaattaccaaa |
38822429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 38822429 - 38822373
Alignment:
| Q |
89 |
atgattgagattggttatagaattcaatgtatgtggatcacataatgtgctcagtgc |
145 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||| | |||||| ||| |
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| T |
38822429 |
atgattgagattggtaatagaattcaatgtatgttgatcacatactctgctcaatgc |
38822373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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