View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12200_low_12 (Length: 382)
Name: NF12200_low_12
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_12 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 15821518 - 15821152
Alignment:
| Q |
12 |
gaacctgtgccaattgcatatgttactcagagtagaggtaaaggacgtgatatgcgacaagtacaatatttcacctgcaaacaattcggacaggttgctc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15821518 |
gaacctgtgccaattgcatatgttactcagagtagaggtaaaggatgtgatatgcgacaagtacaatatttcacctgcaaacaatttggacaggttgctc |
15821419 |
T |
|
| Q |
112 |
ccaactgtaacattaagttttacaactactgcaagcaaaaaggtcatttcatctttgattgtcccatctgtcgtccactgcgaacacaacatctgacaca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
15821418 |
ccaactgtaacattaagttttacaactactgcaagcaaaaaggtcctttcatctctgattgtcccatccgtcctccactgcgaacacaacatctgacaca |
15821319 |
T |
|
| Q |
212 |
agctttacatgtcacttctatctctgcagttgataccttaattactagtgcatctgatggtgattctctacagctgaaaagattcaacaaattgtacttg |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15821318 |
agctttacatgtcactactatctctgcagttgataccttaattactagtgcatctgatggtgattctctacagctgaaaagattcaacaaattgtacttg |
15821219 |
T |
|
| Q |
312 |
ctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattc |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
15821218 |
ctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcgtccatggtttcttgattc |
15821152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 26626653 - 26626286
Alignment:
| Q |
12 |
gaacctgtgccaattgcatatgttactcagagtagaggtaaaggacgtgatatgcgacaagtacaatatttcacctgcaaacaattcggacaggttgctc |
111 |
Q |
| |
|
||||| |||||| ||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || || ||||||| |
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|
| T |
26626653 |
gaaccagtgccagttgcatatgctgctcaaagtagaggtaagggacgtgatatgcgacaagtacaatgtttcacctgcaaacaatttgggcatgttgctc |
26626554 |
T |
|
| Q |
112 |
ccaactgtaacattaagttttacaactactgcaagcaaaaaggtcatttcatctttgattgtcccatctgtcgtccactgcgaacacaacatctgacaca |
211 |
Q |
| |
|
|| ||||| | |||||||| ||| |||||||| ||||| |||||| | |||||||||||||||||| ||| |||| |||||||||| ||| ||||| |
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|
| T |
26626553 |
gcagctgtaccgctaagttttgcaaatactgcaaacaaaatggtcatgttatctttgattgtcccatccgtcccccacggcgaacacaatatccaacaca |
26626454 |
T |
|
| Q |
212 |
agctttacatgtcacttctatctctgcagttgataccttaattactagtgcatctgatggtgattctctacag-ctgaaaagattcaacaaattgtactt |
310 |
Q |
| |
|
||||||||||| |||| ||| |||||||| | | ||||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||| |
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|
| T |
26626453 |
agctttacatgccactactagctctgcagcgcctcctacaattactagtgcatctgatggtggttctctacagcctgaaatgattcaacaaatggtactt |
26626354 |
T |
|
| Q |
311 |
gctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattc |
378 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
26626353 |
gctgctctatcaaatatgggaattcatggtaagtcttctaatgtttctcgtccatggtttcttgattc |
26626286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 49117467 - 49117834
Alignment:
| Q |
12 |
gaacctgtgccaattgcatatgttactcagagtagaggtaaaggacgtgatatgcgacaagtacaatatttcacctgcaaacaattcggacaggttgctc |
111 |
Q |
| |
|
||||| |||||| ||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || || ||||||| |
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|
| T |
49117467 |
gaaccagtgccagttgcatatgctgctcaaagtagaggtaagggacgtgatatgcgacaagtacaatgtttcacctgcaaacaatttgggcatgttgctc |
49117566 |
T |
|
| Q |
112 |
ccaactgtaacattaagttttacaactactgcaagcaaaaaggtcatttcatctttgattgtcccatctgtcgtccactgcgaacacaacatctgacaca |
211 |
Q |
| |
|
|| ||||| | |||||||| ||| |||||||| ||||| |||||| | |||||||||||||||||| ||| |||| |||||||||| ||| ||||| |
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|
| T |
49117567 |
gcagctgtaccgctaagttttgcaaatactgcaaacaaaatggtcatgttatctttgattgtcccatccgtcccccacggcgaacacaatatccaacaca |
49117666 |
T |
|
| Q |
212 |
agctttacatgtcacttctatctctgcagttgataccttaattactagtgcatctgatggtgattctctacag-ctgaaaagattcaacaaattgtactt |
310 |
Q |
| |
|
||||||||||| |||| ||| |||||||| | | ||||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
49117667 |
agctttacatgccactactagctctgcagcgcctcctacaattactagtgcatctgatggtggttctctacagcctgaaatgattcaacaaatggtactt |
49117766 |
T |
|
| Q |
311 |
gctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattc |
378 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
49117767 |
gctgctctatcaaatatgggaattcatggtaagtcttctaatgtttctcgtccatggtttcttgattc |
49117834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 26635801 - 26635697
Alignment:
| Q |
275 |
ttctctacagc-tgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttctt |
373 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||||||| ||| | || |||||||||| ||||||| |||||||||||| ||||||||||||| |
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|
| T |
26635801 |
ttctctacagcctgaaatgattcaacaaatggtacttgctgctctatcatatatgggaattcatgttaagtcttctaatgtttctcgtccatggtttctt |
26635702 |
T |
|
| Q |
374 |
gattc |
378 |
Q |
| |
|
||||| |
|
|
| T |
26635701 |
gattc |
26635697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 35937498 - 35937131
Alignment:
| Q |
12 |
gaacctgtgccaattgcatatgttactcagagtagaggtaaaggacgtgatatgcgacaagtacaatatttcacctgcaaacaattcggacaggttgctc |
111 |
Q |
| |
|
||||| |||||| ||||||||| | |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| || || ||||||| |
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|
| T |
35937498 |
gaaccagtgccagttgcatatgctgctcaaagtaaaggtaagggacgtgatatgcgacaagtacaatgtttcacctgcaaacaatttgggcatgttgctc |
35937399 |
T |
|
| Q |
112 |
ccaactgtaacattaagttttacaactactgcaagcaaaaaggtcatttcatctttgattgtcccatctgtcgtccactgcgaacacaacatctgacaca |
211 |
Q |
| |
|
|| ||||| | |||||||| ||| |||||||| |||| |||||| | |||||||||||||||||| ||| |||| |||||||||| ||| ||| | |
|
|
| T |
35937398 |
gcagctgtaccgctaagttttgcaaatactgcaaacaaattggtcatgttatctttgattgtcccatccgtcccccacggcgaacacaatatccaacata |
35937299 |
T |
|
| Q |
212 |
agctttacatgtcacttctatctctgcagttgataccttaattactagtgcatctgatggtgattctctacag-ctgaaaagattcaacaaattgtactt |
310 |
Q |
| |
|
||||||||||| |||| ||| |||||||| | | | ||||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
35937298 |
agctttacatgccactactagctctgcagcgcctccttcaattactagtgcatctgatggtggttctctacagcctgaaatgattcaacaaatggtactt |
35937199 |
T |
|
| Q |
311 |
gctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattc |
378 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
35937198 |
gctgctctatcaaatatgggaattcatggtaagtcttctaatgtttctcgtccatggtttcttgattc |
35937131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 4866352 - 4866182
Alignment:
| Q |
210 |
caagctttacatgtcacttctatctctgcagttgataccttaattactagtgcatctgatggtgattctctacag-ctgaaaagattcaacaaattgtac |
308 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| || | | | ||||||||||||||||||||||| |||||||||| |||||| |||||||||||| ||| |
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|
| T |
4866352 |
caagctttacatgccactactagctctgcagctgctccttcaattactagtgcatctgatggtggttctctacagtctgaaatgattcaacaaatggtaa |
4866253 |
T |
|
| Q |
309 |
ttgctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattcc |
379 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4866252 |
ttgctgctctttcaaggatgggaattcatggtaagtctcctaatgtttctcgtccatggtttcttgattcc |
4866182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 25 - 378
Target Start/End: Original strand, 21691424 - 21691780
Alignment:
| Q |
25 |
ttgcatatgttactcagagtagaggtaaaggacgtgatatgcgacaagtacaatatttcacctgcaaacaattcggacaggttgctcccaactgtaacat |
124 |
Q |
| |
|
||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| | || ||||| || |
|
|
| T |
21691424 |
ttgcatatgctgctcaaagtagaggtaagggacgtgatatgcgacaagtacaatgtttcacctgcaaacaatttggacatgttgcacgcagctgtaccac |
21691523 |
T |
|
| Q |
125 |
taagttttacaactactgcaagcaaaaaggtcatttcatctttgattgtcccatctgtcgtccactgcgaacacaacatctgacacaagctttacatgtc |
224 |
Q |
| |
|
|||||||| ||| |||| ||| ||||| | |||| | |||||||||||||||||| ||| ||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
21691524 |
taagttttgcaaatactacaaacaaaatgttcatgttatctttgattgtcccatccgtcctccacggcgaacacaatatccgacacaagctttacatgct |
21691623 |
T |
|
| Q |
225 |
acttctatctctgcagttgatacctt-aattactagt--gcatctgatggtgattctctacag-ctgaaaagattcaacaaattgtacttgctgctcttt |
320 |
Q |
| |
|
||| ||| |||||||| || |||| |||||||||| ||||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||| | |
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|
| T |
21691624 |
actactagctctgcag-cgactccttcaattactagtgcgcatctgatggtgcttctctacagcctgaaatgattcaacaaatggtacttgctgctctat |
21691722 |
T |
|
| Q |
321 |
caaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattc |
378 |
Q |
| |
|
|| | || |||||||||| ||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21691723 |
catatatgggaattcatgttaagtcttctaatgtttctcgtccatggtttcttgattc |
21691780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 378
Target Start/End: Complemental strand, 17605946 - 17605853
Alignment:
| Q |
285 |
ctgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattc |
378 |
Q |
| |
|
|||||| |||||||||||| ||| || |||||||| || ||||||||||| ||||||||| | |||| ||||| ||||||||||||||||| |
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|
| T |
17605946 |
ctgaaatgattcaacaaatggtaatttctgctcttccatcaattggaattcagggtaagtcttcaaatgcttctcacccatggtttcttgattc |
17605853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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