View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12200_low_13 (Length: 345)
Name: NF12200_low_13
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 165 - 330
Target Start/End: Original strand, 49081997 - 49082158
Alignment:
| Q |
165 |
cagatattttgttatattcattcaacttacttacttaagactccagctaactaacagatacatacatacgatttcgttctcttgtttgttgatgcggttt |
264 |
Q |
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| T |
49081997 |
cagatattttgttatattcattcaacttacttacttaagactccagctaactaacagatac----atacgatttcgttctcttgtttgttgatgcggttt |
49082092 |
T |
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| Q |
265 |
ttgttttccattcaattaatttactatcatttgagaaagaatgggtgatcataacaataagtttgt |
330 |
Q |
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| T |
49082093 |
ttgttttccattcaattaatttactatcatttgagaaagaatgggtgatcataacaataagtttgt |
49082158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 49081848 - 49081983
Alignment:
| Q |
1 |
aatagatctggttgaatctgaaaccacaaaaacaaagaaagcaataagatatttagttttcgtggctgtaaggcggctattaagcatttaaagtagtttg |
100 |
Q |
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| T |
49081848 |
aatagatctggttgaatctgagaccacaaaaacaaagaaagcaataagatatttagttttcgtggctgtaaggcggctattaagcatttaaagtagtttg |
49081947 |
T |
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| Q |
101 |
aaaaaactattctcttttgtttgcttcttcgtccac |
136 |
Q |
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| T |
49081948 |
aaaaaactattctcttttgttttcttcttcctccac |
49081983 |
T |
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