View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12200_low_14 (Length: 344)
Name: NF12200_low_14
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 33683894 - 33683569
Alignment:
| Q |
1 |
aaataacacttggcaaatcaaatgcaaagtcggcaactatgatgtagcacattaaattaattaaagagtttatagaagggaccgttgagtttgcatttaa |
100 |
Q |
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| T |
33683894 |
aaataacacttggcaaatcaaatgcaaagtcggcaactatgatgtagcacattaaattaattaaagagtttatagaagggaccgttgagtttgcatttaa |
33683795 |
T |
|
| Q |
101 |
agctcatacatacgtcttaactaggccttaccactgccgtaattgtaaagcatggccactcataacaagtaaccaaaatcaacaattaagttaaattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33683794 |
agctcatacatacgtcttaactaggccttaccactgccgtaattgtaaagcatggccactcataacaagtaaccaaaatcaacaattaagttaaattgaa |
33683695 |
T |
|
| Q |
201 |
tctatttcctaaagtctataatattggttgttgacatatcaatctaatcacaaccatggcaaatgatgcagctctaagaacctctatactatggctagca |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33683694 |
tctatttcctaaagtctataatattggttggtgacatatcaatctaatcacaaccatggcaaatgatgcagctctaagaacctctatactatggctagca |
33683595 |
T |
|
| Q |
301 |
gcagttatattggtagttggtatatg |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
33683594 |
gcagttatattggtagttggtatatg |
33683569 |
T |
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