View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12200_low_15 (Length: 301)

Name: NF12200_low_15
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12200_low_15
NF12200_low_15
[»] chr3 (4 HSPs)
chr3 (10-278)||(38186877-38187147)
chr3 (117-257)||(38181065-38181210)
chr3 (175-250)||(3987011-3987086)
chr3 (181-237)||(344967-345023)
[»] chr6 (1 HSPs)
chr6 (149-250)||(33083996-33084097)
[»] chr7 (4 HSPs)
chr7 (142-250)||(48736142-48736250)
chr7 (200-250)||(36514450-36514500)
chr7 (142-248)||(30200208-30200310)
chr7 (202-239)||(40169640-40169677)
[»] chr5 (4 HSPs)
chr5 (181-250)||(42199258-42199325)
chr5 (171-250)||(3097135-3097212)
chr5 (142-195)||(16134477-16134530)
chr5 (202-250)||(10082982-10083030)
[»] chr4 (3 HSPs)
chr4 (180-254)||(10775661-10775735)
chr4 (175-250)||(6478911-6478986)
chr4 (201-249)||(44360077-44360125)
[»] chr2 (3 HSPs)
chr2 (142-233)||(9556628-9556719)
chr2 (181-250)||(38434921-38434990)
chr2 (200-248)||(7615286-7615334)
[»] chr1 (5 HSPs)
chr1 (141-250)||(39422285-39422393)
chr1 (186-250)||(18793231-18793295)
chr1 (181-248)||(43423689-43423756)
chr1 (142-244)||(9509249-9509351)
chr1 (142-198)||(42009611-42009667)
[»] chr8 (6 HSPs)
chr8 (175-250)||(32043554-32043629)
chr8 (200-250)||(25985508-25985558)
chr8 (200-250)||(45419226-45419276)
chr8 (142-250)||(16252866-16252972)
chr8 (175-239)||(9695595-9695659)
chr8 (141-249)||(39953508-39953616)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 38187147 - 38186877
Alignment:
Q  10 cagaacctgtgacaaatttgaaagtggttt-attaaagatatagatcaatttaatggtttactcagaaatttatttgaggaacgaagnnnnnnnn-aaag 107  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||         ||||    
T  38187147 cagaacatgtgacaaatttgaaagtggttttattaaaaatatagatcaatttaatggtttactcataaatttatttgaggaacgaagtttttttttaaag 38187048  T
Q  108 aggagagcgcaatctatcttaaaattcaattaaaatgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38187047 aggagagcgcaatctatcttaaaattcaattaaaatgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgtcatagagaga 38186948  T
Q  208 attggggtaacacttatggtagaaaagatggtaaaaactagacatagatgtatgtgattaagagtgtagat 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38186947 attggggtaacacttatggtagaaaagatggtaaaaactagacatagatgtatgtggttaagagtgtagat 38186877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 257
Target Start/End: Complemental strand, 38181210 - 38181065
Alignment:
Q  117 caatctatcttaaaattcaattaaaatgttgt-------gttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaat 209  Q
    ||||||||||||| |||||||||||||||||        ||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||| | |||    
T  38181210 caatctatcttaagattcaattaaaatgttgcattggccgttggatatatgataaggttaaatgagatataattacaaatgacgacgttaaagataaaat 38181111  T
Q  210 tggggtaacacttatggtagaaaagatggtaaaaactagacatagatg 257  Q
    | ||||| |||||||||||||||| |||||| ||| ||||| ||||||    
T  38181110 t-gggtatcacttatggtagaaaa-atggtagaaattagacttagatg 38181065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 3987011 - 3987086
Alignment:
Q  175 gatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||| ||||| |||||||||  ||  ||||||| |||||||| ||| ||| ||||||||||||||| |||||||||    
T  3987011 gatagaattagaaatgacgatattggagagagagttggggtatcacctatagtagaaaagatggtagaaactagac 3987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 345023 - 344967
Alignment:
Q  181 attacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatg 237  Q
    |||| |||||| ||| ||| ||||||| |||||||| ||||||| ||||||||||||    
T  345023 attagaaatgatgacattagagagagagttggggtagcacttatagtagaaaagatg 344967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 33083996 - 33084097
Alignment:
Q  149 gttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactag 248  Q
    ||||||||| || || || || ||| |||| ||||| |||||||||  ||| ||||||| |||||||| ||| ||||||||||||||||||| |||||||    
T  33083996 gttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggtagcacctatggtagaaaagatggtagaaactag 33084095  T
Q  249 ac 250  Q
    ||    
T  33084096 ac 33084097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 48736250 - 48736142
Alignment:
Q  142 atgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaa 241  Q
    |||||| |||| |||| || || || || |||||||| ||||| |||||||||| ||||||||||| |||||||| ||| ||  ||||||||||||| |     
T  48736250 atgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggtagcacctacagtagaaaagatgggag 48736151  T
Q  242 aaactagac 250  Q
    |||||||||    
T  48736150 aaactagac 48736142  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 36514500 - 36514450
Alignment:
Q  200 tagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||||||| |||||||| ||| ||| ||||||||||||||| |||||||||    
T  36514500 tagagagagttggggtagcacctatagtagaaaagatggtagaaactagac 36514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 30200310 - 30200208
Alignment:
Q  142 atgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaa 241  Q
    |||||||||||||||| || || ||||| ||| ||||| |||| ||||||| || ||    ||||| || ||||||||| ||| ||||||||||||||      
T  30200310 atgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacatt----agagagttagggtaacacctatagtagaaaagatggtgg 30200215  T
Q  242 aaactag 248  Q
    |||||||    
T  30200214 aaactag 30200208  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 40169640 - 40169677
Alignment:
Q  202 gagagaattggggtaacacttatggtagaaaagatggt 239  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  40169640 gagagaattggggtagcacttatagtagaaaagatggt 40169677  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 42199258 - 42199325
Alignment:
Q  181 attacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||| |||||||||||||| |||||||||||||||| ||||||  ||||||||||||||  |||||||||    
T  42199258 attagaaatgacgacgttacagagagaattggggtagcactta--gtagaaaagatggtggaaactagac 42199325  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 3097135 - 3097212
Alignment:
Q  171 atgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||||||| ||||| |||||||||| ||||||||||  |||||||||||| |||  ||||||||||| || |||||||||    
T  3097135 atgagataaaattaaaaatgacgacattatagagag--ttggggtaacacctatattagaaaagatgctagaaactagac 3097212  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 16134530 - 16134477
Alignment:
Q  142 atgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgac 195  Q
    ||||||||||||||||||| || || || |||||||| ||||| ||||||||||    
T  16134530 atgttgtgttggatgtatggtaagactagatgagataaaattagaaatgacgac 16134477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 10083030 - 10082982
Alignment:
Q  202 gagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    ||||| ||||||||| ||| ||| ||||||||||||||| |||||||||    
T  10083030 gagagcattggggtatcacctatagtagaaaagatggtagaaactagac 10082982  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 10775735 - 10775661
Alignment:
Q  180 aattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagacatag 254  Q
    ||||| ||||||| || ||| ||||||  |||||||||||| ||| ||||||||||||||| |||||||||||||    
T  10775735 aattagaaatgacaacattagagagagtgttggggtaacacctatagtagaaaagatggtagaaactagacatag 10775661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 6478986 - 6478911
Alignment:
Q  175 gatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||| ||||| |||||| ||| ||| || |||| |||||||  ||| ||| |||||||||||||||||||||||||    
T  6478986 gatagaattagaaatgatgacattagagtgagagttggggtggcacctatagtagaaaagatggtaaaaactagac 6478911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 44360077 - 44360125
Alignment:
Q  201 agagagaattggggtaacacttatggtagaaaagatggtaaaaactaga 249  Q
    ||||||| |||||||| ||| ||| ||||||||||||||| ||||||||    
T  44360077 agagagagttggggtatcacctatagtagaaaagatggtagaaactaga 44360125  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 9556719 - 9556628
Alignment:
Q  142 atgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaa 233  Q
    |||||||||||||||| || || ||||| | | ||||| |||| ||||||| || ||| ||||| | |||||||||||||||| ||||||||    
T  9556719 atgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagagaaagttggggtaacacttatagtagaaaa 9556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 38434921 - 38434990
Alignment:
Q  181 attacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||| ||||||| || ||| |||||||||||||||| ||| ||| ||||||||||||||  |||||||||    
T  38434921 attagaaatgacaacattagagagagaattggggtagcacctatagtagaaaagatggtggaaactagac 38434990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 7615286 - 7615334
Alignment:
Q  200 tagagagaattggggtaacacttatggtagaaaagatggtaaaaactag 248  Q
    |||||||| |||||||||||| ||| ||||||||||||||  |||||||    
T  7615286 tagagagacttggggtaacacctatagtagaaaagatggtgcaaactag 7615334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 39422393 - 39422285
Alignment:
Q  141 aatgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggta 240  Q
    ||||||||||| ||||| || || ||||| |||||||| ||||| ||||||| |  ||| | ||||| |||| ||||||| ||| ||||||||||| |||    
T  39422393 aatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattaga-agagagttggagtaacacatatagtagaaaagatagta 39422295  T
Q  241 aaaactagac 250  Q
     |||||||||    
T  39422294 gaaactagac 39422285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 18793295 - 18793231
Alignment:
Q  186 aaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||||||||| ||| ||||||  ||||||||  |||||| ||||||||||||||| |||||||||    
T  18793295 aaatgacgacattaaagagagggttggggtaggacttattgtagaaaagatggtagaaactagac 18793231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 43423689 - 43423756
Alignment:
Q  181 attacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactag 248  Q
    |||| ||||||| || ||| ||||||| |||||||||||| ||| ||||||||||||||  |||||||    
T  43423689 attagaaatgaccacattagagagagagttggggtaacacctatagtagaaaagatggtggaaactag 43423756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 9509249 - 9509351
Alignment:
Q  142 atgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaa 241  Q
    |||||||||||||||  ||||| || || |   ||||| |||| |||||||  | ||| ||||||| |||||||| ||| ||| ||||||||||||||||    
T  9509249 atgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagagagttggggtagcacctatagtagaaaagatggtaa 9509348  T
Q  242 aaa 244  Q
    |||    
T  9509349 aaa 9509351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 42009611 - 42009667
Alignment:
Q  142 atgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgtt 198  Q
    |||||||||||||||| || || ||||||| |||||| ||||||| ||||| |||||    
T  42009611 atgttgtgttggatgtttggtaagattaaacgagataaaattacagatgacaacgtt 42009667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 32043554 - 32043629
Alignment:
Q  175 gatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||| ||||| ||||||| || ||| ||||||| |||||||| ||| ||| ||| ||||||||||| |||||||||    
T  32043554 gatagaattagaaatgacaacattagagagagagttggggtatcacctatagtacaaaagatggtagaaactagac 32043629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 25985508 - 25985558
Alignment:
Q  200 tagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    |||||||| |||||||| ||| ||| ||||||||||||||| |||||||||    
T  25985508 tagagagagttggggtagcacctatagtagaaaagatggtagaaactagac 25985558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 45419226 - 45419276
Alignment:
Q  200 tagagagaattggggtaacacttatggtagaaaagatggtaaaaactagac 250  Q
    ||||||||||||||||| ||| ||| ||||||||||||||| ||| |||||    
T  45419226 tagagagaattggggtagcacctatagtagaaaagatggtataaaatagac 45419276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 16252866 - 16252972
Alignment:
Q  142 atgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggtaa 241  Q
    |||||||||||||||| || || ||||| |||||||| ||||| ||||||| || |  |||||||| ||| |||  | | ||||| |||||||||| ||     
T  16252866 atgttgtgttggatgtgtggtaagattagatgagataaaattagaaatgacaacat--tagagagagttgaggttgctcctatggaagaaaagatgatag 16252963  T
Q  242 aaactagac 250  Q
    |||||||||    
T  16252964 aaactagac 16252972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 9695595 - 9695659
Alignment:
Q  175 gatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggt 239  Q
    |||| ||||| ||||||| || ||||||||| | |||||||| ||| ||| ||||||||||||||    
T  9695595 gatagaattagaaatgacaacattatagagatatttggggtagcacctatagtagaaaagatggt 9695659  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 39953616 - 39953508
Alignment:
Q  141 aatgttgtgttggatgtatgatatgattaaatgagatataattacaaatgacgacgttatagagagaattggggtaacacttatggtagaaaagatggta 240  Q
    ||||||| ||||||||| || || |||||||   |||||||||| |||| | ||| ||| ||||||| ||||| || ||| |||   |||||||||||||    
T  39953616 aatgttgcgttggatgtgtggtaagattaaacatgatataattagaaataatgacattagagagagagttgggatagcacctatatgagaaaagatggta 39953517  T
Q  241 aaaactaga 249  Q
     ||||||||    
T  39953516 gaaactaga 39953508  T

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