View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12200_low_18 (Length: 227)
Name: NF12200_low_18
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 1180407 - 1180322
Alignment:
| Q |
18 |
acagaagcccgtgaagatagaagtaacccaaaaaggaaagcccaagcccaacaataagaaaggttgaaatttccaataaatataac |
103 |
Q |
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| T |
1180407 |
acagaagcccatgaagatagaagtaacccaaaaaggaaagcccaagcccaacaataagaaaggttgaaatttccaataaatataac |
1180322 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 1180262 - 1180214
Alignment:
| Q |
163 |
taacagtaacagtttcaatcttgttcatctttcttgtgcgtgaagaaat |
211 |
Q |
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| T |
1180262 |
taacagtaacagtttcaatcttgttcatctttcttgtgcgtgaagaaat |
1180214 |
T |
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