View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12200_low_3 (Length: 726)
Name: NF12200_low_3
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 320 - 661
Target Start/End: Original strand, 32855987 - 32856328
Alignment:
| Q |
320 |
ccctttgaactaagataatatctccagctggaagnnnnnnnnnnnnnnnntatcttcaaagcactgtaactgttctgcactctgtggctactaccatcac |
419 |
Q |
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| T |
32855987 |
ccctttgaactaagataatatctccagctggaagaaaaacaaaaagaaaatatcttcaaagcactgtaactgttctgcactctgtggctactaccgtcac |
32856086 |
T |
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| Q |
420 |
ccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856087 |
ccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattt |
32856186 |
T |
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| Q |
520 |
tccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgtggacaaaga |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32856187 |
tccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgtggacagaga |
32856286 |
T |
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| Q |
620 |
aatagatctaaatttaacaactaattactaacctttgtcatt |
661 |
Q |
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| T |
32856287 |
aatagatctaaatttaacaactaattactaacctttgtcatt |
32856328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 32855684 - 32855953
Alignment:
| Q |
17 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctgct |
116 |
Q |
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| T |
32855684 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaatcaagagaagagttaccctgct |
32855783 |
T |
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| Q |
117 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
216 |
Q |
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| T |
32855784 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
32855883 |
T |
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| Q |
217 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
286 |
Q |
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| T |
32855884 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
32855953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 32850285 - 32850489
Alignment:
| Q |
36 |
tggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctg--------ctctacatgctca |
127 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
32850285 |
tggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaattgagagaagagttaccctgctctacgcctctacatgctca |
32850384 |
T |
|
| Q |
128 |
aatcatcattagtcattctgatac--------------tcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaa |
213 |
Q |
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| T |
32850385 |
a---atcattagtcatgctgatacaactttagggattatcaggtcctttccagctgaaaataccaactgctacctgttggggttgctaaaagttactaag |
32850481 |
T |
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| Q |
214 |
tgcaacaa |
221 |
Q |
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|||||||| |
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| T |
32850482 |
tgcaacaa |
32850489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 509
Target Start/End: Original strand, 32850670 - 32850766
Alignment:
| Q |
408 |
tactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttct |
507 |
Q |
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| T |
32850670 |
tactaccgtcacctagtaaatcatctatctttgcaaggtaatcacacttc-----ctgcacaatttatgcagaaacagctacactttttcatctatttct |
32850764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 32850520 - 32850561
Alignment:
| Q |
244 |
gtgcaagaccacatctcccacgcttgtagttttatttttccc |
285 |
Q |
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| T |
32850520 |
gtgcaagaccccatctcccacgattgtagttttatttttccc |
32850561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 32850592 - 32850625
Alignment:
| Q |
320 |
ccctttgaactaagataatatctccagctggaag |
353 |
Q |
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| T |
32850592 |
ccctttgaactaagataatatctccagctggaag |
32850625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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