View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12200_low_6 (Length: 653)
Name: NF12200_low_6
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 23 - 640
Target Start/End: Original strand, 24363917 - 24364534
Alignment:
| Q |
23 |
ggacatggacggaaggctattgagctgtttaaatcaatgcagaacgctggcttcagaccagattctgtcacgtttatagcattgttaacggcatgtaacc |
122 |
Q |
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| T |
24363917 |
ggacatggacggaaggctattgagctgtttaaatcaatgcagaacgctggcttcagaccagattctgtcacgtttatagcattgttaacggcatgtaacc |
24364016 |
T |
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| Q |
123 |
atgcaggtttagtagccaaaggattagaatatcttggtcagatgcagagtttatttggtataaagccaaaactagagcattatgcatgtgtggttgatat |
222 |
Q |
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| T |
24364017 |
atgcaggtttagtagccgaagggttagaatatcttggtcagatgcagagtttgtttggtataaagccaaaactagagcattatgcatgtgtggttgatat |
24364116 |
T |
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| Q |
223 |
gcttggtcgcgcaggacgattgaacgaagctttggagcttgtgaatgagcttccagacaaacccgattccaggatatggagttcgttactcagttcatgc |
322 |
Q |
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| T |
24364117 |
gcttggtcgcgcaggacgattgaacgaagctttggagcttgtaaatgagcttccagacaaacccgattccaggatatggagttcgttactcagttcatgc |
24364216 |
T |
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| Q |
323 |
agaaattacagggatttggatatcggagagaaagtagccaacaagttattagaattgggaccagacaaagctgagaattatgtattgatatcaaacttct |
422 |
Q |
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| T |
24364217 |
agaaattacagggatttggatattggagagaaagtagctaacaagttattagaattgggaccagacaaagctgagaattatgtattgatatcaaacttct |
24364316 |
T |
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| Q |
423 |
atgctcgattaggaaaatgggacgaggttagaaaaatgaggcagaggatgaaggaaattggccttcagaaagatgcaggttgtagttggattgaaatagg |
522 |
Q |
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| T |
24364317 |
atgctcgactaggaaaatgggacgaggttagaaaaatgaggcagaggatgaaggaaattggccttcagaaagatgcaggttgtagttggattgaaatagg |
24364416 |
T |
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| Q |
523 |
aggaaaggtttctagatttcttgttggtgatgaatcacttttggaatcaatgaaaattcagcaaacttggattgaattggagaagaaaataaacaaaatt |
622 |
Q |
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| T |
24364417 |
aggaaaggtttctagatttcttgttggtgatgaatcacttttgcaatcaatgaaaattcagcaaacatggattgaattggagaagaaaataaacaaaatt |
24364516 |
T |
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| Q |
623 |
ggatataaacctgacaca |
640 |
Q |
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| T |
24364517 |
ggatataaacctgacaca |
24364534 |
T |
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