View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12200_low_7 (Length: 608)
Name: NF12200_low_7
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 12 - 591
Target Start/End: Complemental strand, 36955778 - 36955199
Alignment:
| Q |
12 |
aacctgtgtcaacgttgatgcccttttagaataacgattctgaaaataagcggtggcataagtatcaaccatgagagaccccatagcagtgcacatagcc |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955778 |
aacctgtgtcaacgttgatgcctttttagaatgacgattctgaaaataagcggtggcataagtatcaaccatgagagaccccatagcagtgcacatagcc |
36955679 |
T |
|
| Q |
112 |
acaaaaccggtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955678 |
acaaaaccggtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtgg |
36955579 |
T |
|
| Q |
212 |
ataatatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacacc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955578 |
ataatatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacacc |
36955479 |
T |
|
| Q |
312 |
aattgcacttgcaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattct |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955478 |
aattgcacttacaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattct |
36955379 |
T |
|
| Q |
412 |
gcggctattagagttgggattacgaggaagatcaagacagaaaaaactaagactttgatattgtttttgaatcccatttcaattgttagaaacccaaaga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955378 |
gcggctattagagttgggattacgaggaagatcaagacagaaaaaactaagactttgatattgtttttgaatcccatttcaattgttagaaacccaaaga |
36955279 |
T |
|
| Q |
512 |
aatgtggttgttacaaaatgtgagagagttgtgcagggagagatgaaacaatgcacaaaatgtgtgtattgtgaacaatt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955278 |
aatgtggttgttacaaaatgtgagagagttgtgcagggagagatgaaacaatgcacaaaatgtgtgtattgtgaacaatt |
36955199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 510
Target Start/End: Complemental strand, 36939048 - 36938568
Alignment:
| Q |
30 |
tgcccttttagaataacgattctgaaaataagcggtggcataagtatcaaccatgagagaccccatagcagtgcacatagccacaaaaccggtgaatgga |
129 |
Q |
| |
|
|||| |||| |||||| | || ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36939048 |
tgcctttttggaataatggttttgaaaataagcagtggcataagtatcaaccataagagtccccatagcagtgcacatagccacaaaaccagtgaatgga |
36938949 |
T |
|
| Q |
130 |
aaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataatatcacaccggcag |
229 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||| |
|
|
| T |
36938948 |
aaatcaccccaaggatgtttctttaaacgaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggttgccaaaatcacaccagcag |
36938849 |
T |
|
| Q |
230 |
caaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaattgcacttgcaactaa |
329 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
36938848 |
caaaggctttgatgatgaaaaatatatctttttcggggcttaacgccggtatcactttgccaagaagtggaatacaaacaccaattccacttgcaactaa |
36938749 |
T |
|
| Q |
330 |
aattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcggctattagagttggg |
429 |
Q |
| |
|
||||| |||||||||||||| || ||||| | ||||||| ||||||||||||| |||||| |||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
36938748 |
tattgatactaaagctgctatcttataacgaagagctttgggtttgtctctatctaaatcttcttcatcacacgtgcattcggcggctattagagtcggg |
36938649 |
T |
|
| Q |
430 |
attacgaggaagatcaagacagaaaaaactaagactttgatattgtttttgaatcccatttcaattgttagaaacccaaag |
510 |
Q |
| |
|
|||| ||||| ||||||| ||| ||||| ||||||||| |||||||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
36938648 |
attataaggaatatcaagatagagaaaacaaagactttgttattgttttttaatcccatttcaatggttagaaactcaaag |
36938568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 74 - 510
Target Start/End: Complemental strand, 36951228 - 36950795
Alignment:
| Q |
74 |
tatcaaccatgagagaccccatagcagtgcacatagccacaaaaccggtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagatt |
173 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36951228 |
tatcaaccataagaatccccatggcagtgcacatagccacaaaaccggtgaatggaaaatcaccccaaggatgttcctttaaaca-ggtgaagtaagatt |
36951130 |
T |
|
| Q |
174 |
ctcaaaagcatcaggaagcacatgaatgaaaccggtggataatatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaac |
273 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36951129 |
ctcaaaagcatcaggaagcacgtgaatgaaaccggtggccaaaatcacaccagcagcaaaggctttaataatgaaaaatatatctttttcagggcttaac |
36951030 |
T |
|
| Q |
274 |
gccggtattactttgccaagaagtgggataaaaacaccaattgcacttgcaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctt |
373 |
Q |
| |
|
|||||||| |||||||| |||||||| ||| ||||||||||| |||||||||||| ||||| |||||||||||||| || ||||| | |||||||| || |
|
|
| T |
36951029 |
gccggtatcactttgcctagaagtggaatacaaacaccaattccacttgcaactagtattgatactaaagctgctatcttataacgaagggctttggatt |
36950930 |
T |
|
| Q |
374 |
tgtctctatcttcatcttcctcatcacatgtgcattctgcggctattagagttgggattacgaggaagatcaagacagaaaaaactaagactttgatatt |
473 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||| |||| ||||||||||||| ||| ||||| ||||||||| ||| |
|
|
| T |
36950929 |
tgtctctatcttcatcttctttatcgcatgtgcattctgcggctattagagtcggggttacaaggaagatcaagatagagaaaacaaagactttgttat- |
36950831 |
T |
|
| Q |
474 |
gtttttgaatcccatttcaattgttagaaacccaaag |
510 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
36950830 |
-ttttttaatcccatttcaatggttagaaactcaaag |
36950795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 30 - 430
Target Start/End: Complemental strand, 36993441 - 36993041
Alignment:
| Q |
30 |
tgcccttttagaataacgattctgaaaataagcggtggcataagtatcaaccatgagagaccccatagcagtgcacatagccacaaaaccggtgaatgga |
129 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| ||||| ||| |
|
|
| T |
36993441 |
tgcccttttagaataatggttctgaaaataagcggttgcataagtatcaaccataagagtccccatagcggtgcacatagctacaaaaccagtgaaggga |
36993342 |
T |
|
| Q |
130 |
aaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataatatcacaccggcag |
229 |
Q |
| |
|
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
36993341 |
aaatcaccccaaggatgttcgtttaaacatggagaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggacagtatcacaccggcag |
36993242 |
T |
|
| Q |
230 |
caaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaattgcacttgcaactaa |
329 |
Q |
| |
|
|||| | ||| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
36993241 |
caaatgctttgatgataaaaaatatatctttttcagggcttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaa |
36993142 |
T |
|
| Q |
330 |
aattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcggctattagagttggg |
429 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||| | | |||| || ||||||||||| || ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
36993141 |
tattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttggg |
36993042 |
T |
|
| Q |
430 |
a |
430 |
Q |
| |
|
| |
|
|
| T |
36993041 |
a |
36993041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 30 - 430
Target Start/End: Complemental strand, 37018881 - 37018481
Alignment:
| Q |
30 |
tgcccttttagaataacgattctgaaaataagcggtggcataagtatcaaccatgagagaccccatagcagtgcacatagccacaaaaccggtgaatgga |
129 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| ||||| ||| |
|
|
| T |
37018881 |
tgcccttttagaataatggttctgaaaataagcggttgcataagtatcaaccataagagtccccatagcggtgcacatagctacaaaaccagtgaaggga |
37018782 |
T |
|
| Q |
130 |
aaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataatatcacaccggcag |
229 |
Q |
| |
|
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
37018781 |
aaatcaccccaaggatgttcgtttaaacatggagaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggacagtatcacaccggcag |
37018682 |
T |
|
| Q |
230 |
caaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaattgcacttgcaactaa |
329 |
Q |
| |
|
|||| | ||| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
37018681 |
caaatgctttgatgataaaaaatatatctttttcagggcttaatgccggtatcactttcccaagaagtgggagacaaacaccaattgcacttgcaactaa |
37018582 |
T |
|
| Q |
330 |
aattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcggctattagagttggg |
429 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||||| | | |||| || ||||||||||| || ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
37018581 |
tattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcagctattagagttggg |
37018482 |
T |
|
| Q |
430 |
a |
430 |
Q |
| |
|
| |
|
|
| T |
37018481 |
a |
37018481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 36951288 - 36951438
Alignment:
| Q |
108 |
agccacaaaaccggtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36951288 |
agccacaaaaccggtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacgtgaatgaaaccg |
36951387 |
T |
|
| Q |
208 |
gtggataatatcacaccggcagcaaaggttttaatgatgaaaaatatatctttt |
261 |
Q |
| |
|
|||| || ||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36951388 |
gtggccaaaatcacac---cagcaaaggctttaatgatgaaaaatatatctttt |
36951438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 36951250 - 36951288
Alignment:
| Q |
97 |
gcagtgcacatagccacaaaaccggtgaatggaaaatca |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36951250 |
gcagtgcacatagccacaaaaccggtgaatggaaaatca |
36951288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 27253396 - 27253541
Alignment:
| Q |
126 |
tggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataatatcacaccg |
225 |
Q |
| |
|
|||||||||||||||||| | |||||| | |||||| ||| | | | |||| || ||||| ||||| | ||||| |||||||| | || || |||||| |
|
|
| T |
27253396 |
tggaaaatcaccccaaggtttttccttaagacaaggcgaattcaaactctcgaatgcatccggaagtatgtgaataaaaccggttgccaaaattacaccg |
27253495 |
T |
|
| Q |
226 |
gcagcaaaggttttaatgatgaaaaatatatctttttcagggctta |
271 |
Q |
| |
|
|| || |||| |||||| ||||||||||| || |||| |||||||| |
|
|
| T |
27253496 |
gccgcgaaggctttaatcatgaaaaatatgtcatttttagggctta |
27253541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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