View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12200_low_9 (Length: 555)
Name: NF12200_low_9
Description: NF12200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12200_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 9 - 555
Target Start/End: Complemental strand, 25192930 - 25192384
Alignment:
| Q |
9 |
aacctgtggactttcctaaggtttgttccatgtagaagcagtagctttctgtctagaaataaaaggcgatggtgctaactgataagagagaggaactgca |
108 |
Q |
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| T |
25192930 |
aaccagtggactttcctaaggtttgttccatgtagaagcagtagctttctgtctagaaataaaaggcgatggtgctaactgataagagagaggaactgca |
25192831 |
T |
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| Q |
109 |
tcaagaaatggctgttggtggtctgtagtctgtacaaatggtaaaacctactgatatattttggctacacagaaatttatacttatgatgtgtatgtcta |
208 |
Q |
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| T |
25192830 |
tcaagaaatggctgttggtggtctgtagtctgtacaaatggtaaaacctactgatatattttggctacacagaaatttatacttatgatgtgtatgttta |
25192731 |
T |
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| Q |
209 |
aatgcttagcattgcaagtttcctttgaacttattttagcgttgggttgttgccattggttgatttattgtctttatatcgttgttatacattaactttg |
308 |
Q |
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| T |
25192730 |
aatgcttagcattgcaagtttcctttgagcttattttagcgttgggttgttgccattggttgatttattgtctttatatcgttgttatacattaactttg |
25192631 |
T |
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| Q |
309 |
gcaaatgtgctcctgatgtgctgcttatgaattgtttctatgatttcttatgtagccgatatataannnnnnnatgcttgcaagtaaatatccctcttat |
408 |
Q |
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| T |
25192630 |
gcaaatgtgctcctgatgtgctgcttatgaattgtttctaggatttcttatgtagccgatatataatttttttatgcttgcaagtaaatatccctcttat |
25192531 |
T |
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| Q |
409 |
aatacaatgacaatggcattaagtctctatgtgctgctatttctaatctgctctcttgttctctctaatgatatgttatttctgtatcctttttactact |
508 |
Q |
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| T |
25192530 |
aatacaatgacaatggcattaagtctctatgtgctgctatttctaatctgctctcttgttctctctaatgatatgttatttctgtatcctttttactact |
25192431 |
T |
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| Q |
509 |
aaacaagaccaatgctattgccaattctacagttttcataacttaat |
555 |
Q |
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| T |
25192430 |
aaacaagaccaatgctattgccaattctacagttttcataacttaat |
25192384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 30631951 - 30631995
Alignment:
| Q |
319 |
tcctgatgtgctgcttatgaattgtttctatgatttcttatgtag |
363 |
Q |
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| T |
30631951 |
tcctgatgtgctgcttatcaattgattctaggttttcttatgtag |
30631995 |
T |
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