View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12201_high_2 (Length: 330)

Name: NF12201_high_2
Description: NF12201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12201_high_2
NF12201_high_2
[»] chr1 (1 HSPs)
chr1 (29-330)||(29736381-29736682)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 29 - 330
Target Start/End: Original strand, 29736381 - 29736682
Alignment:
Q  29 atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29736381 atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa 29736480  T
Q  129 ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29736481 ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc 29736580  T
Q  229 agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgagtctatatcttaatcttaatct 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29736581 agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgagtctatatcttaatcttaatct 29736680  T
Q  329 ta 330  Q
    ||    
T  29736681 ta 29736682  T

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