View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12201_high_5 (Length: 304)
Name: NF12201_high_5
Description: NF12201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12201_high_5 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 26841277 - 26841561
Alignment:
| Q |
19 |
tagaacaatgatatatacttcctctgttttttatcttttgttgttttaactcttagcacaagtccaaaaatcctttctctcttctcaccatatcggccgc |
118 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26841277 |
tagaacaatgatatatacttcgtatgttttttatcttttgttgttttaactcttagcacaagtccaaaaatcctttctctcttctcactatatcggccgc |
26841376 |
T |
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| Q |
119 |
catctaacttcttacccccgccgccccttctttccaaattcttttggttcacaatgtaaacggtggtggctgatggtgcgaatatggaacagccatccgc |
218 |
Q |
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| T |
26841377 |
catctaacttcttacccccgctgtcccttctttccaaattcttttggttcataatgtaaacggtggtggctgatggtgcgaatatggaacagccatccgc |
26841476 |
T |
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| Q |
219 |
atcaccactcatctccattctctcggcgttgatttcgtcgagagaatgggttcttggtgtgttcttgttttttccgatggttgcgc |
304 |
Q |
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| T |
26841477 |
atcaccactggtcactattctctcggcgttgatttcgtcgagaggatgggttcttggtgtgttcttg-tttttccgatggttgcgc |
26841561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 90 - 294
Target Start/End: Original strand, 15049398 - 15049605
Alignment:
| Q |
90 |
cctttctctcttctcaccatatcggccgccatctaacttcttacccccgccgccccttctttccaaattcttttggttcacaatgtaaa---cggtggtg |
186 |
Q |
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||||||||||||||||| |||||||||| |||| |||||| | | | |||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
15049398 |
cctttctctcttctcactgtatcggccgctgcctaaattcttatctctgtcgccccttctttccaaattcctttggttcacaatgtaaacggcggtggtg |
15049497 |
T |
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| Q |
187 |
gctgatggtgcgaatatggaacagccatccgcatcaccactcatctccattctctcggcgttgatttcgtcgagagaatgggttcttggtgtgttcttgt |
286 |
Q |
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| T |
15049498 |
gctgaaggtgcgaagatggaacaaccatccgcatcacctctagtcactgttctctcggcgctgatttcgcagaaagaatgtgttcttggtgcgttcttgt |
15049597 |
T |
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| Q |
287 |
tttttccg |
294 |
Q |
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|||||||| |
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| T |
15049598 |
tttttccg |
15049605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 1654283 - 1654181
Alignment:
| Q |
121 |
tctaacttcttacccccgccgccccttctttccaaattcttttggttcacaatgtaaacggtggtggctgatggtgcgaatatggaacagccatccgcat |
220 |
Q |
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| T |
1654283 |
tctaactccttatctctgccgccccttctttccaaatttctttggttctcaatgtaaacggcggtgggtggtggtgcgaagatggaa-aaccatccgcat |
1654185 |
T |
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| Q |
221 |
cacc |
224 |
Q |
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|||| |
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| T |
1654184 |
cacc |
1654181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 840838 - 840801
Alignment:
| Q |
45 |
ttttttatcttttgttgttttaactcttagcacaagtc |
82 |
Q |
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| T |
840838 |
ttttttatcttttgatgttttaactcttggcacaagtc |
840801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 12792810 - 12792854
Alignment:
| Q |
172 |
atgtaaacggtggtggctgatggtgcgaatatggaacagccatcc |
216 |
Q |
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| T |
12792810 |
atgtaaatggtggtggctggtggtgcgaagatggaacagccatcc |
12792854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 5745492 - 5745534
Alignment:
| Q |
182 |
tggtggctgatggtgcgaatatggaacagccatccgcatcacc |
224 |
Q |
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| T |
5745492 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
5745534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 22376 - 22334
Alignment:
| Q |
182 |
tggtggctgatggtgcgaatatggaacagccatccgcatcacc |
224 |
Q |
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| T |
22376 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
22334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 26025527 - 26025576
Alignment:
| Q |
33 |
atacttcctctgttttttatcttttgttgttttaactcttagcacaagtc |
82 |
Q |
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| T |
26025527 |
atactccctccgttttttatcttttgatgttttagctcttggcacaagtc |
26025576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 21727949 - 21727901
Alignment:
| Q |
34 |
tacttcctctgttttttatcttttgttgttttaactcttagcacaagtc |
82 |
Q |
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| T |
21727949 |
tactccctccgttttttatcttttgatgttttagctcttggcacaagtc |
21727901 |
T |
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