View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12201_low_1 (Length: 387)
Name: NF12201_low_1
Description: NF12201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12201_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 377
Target Start/End: Complemental strand, 18190482 - 18190112
Alignment:
| Q |
6 |
aggatcacagagcggaacttatt-cacaatagaggtactctataatcgaacaaaactatgcagaagaacatcattatgtaaagcaataatatagccacaa |
104 |
Q |
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| T |
18190482 |
aggatcacacagtggaacttttttcacaatagaggtactctataatcgaacaaaactatgcagaagaacatcattatgtaaagcaataatatagccacaa |
18190383 |
T |
|
| Q |
105 |
aggtacaccaccagccttcagattgagaggaagaagtattgaaagtgtaatgcacaaggcgaggtcactaaaagctttcaatttcaacaacccttgccat |
204 |
Q |
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| T |
18190382 |
aggtacacca---gccttcagattgagaggaagaattattaaaagtgtaatgcacaaggcgaggtcactaaaagctttcaatttcaacaacccttgccat |
18190286 |
T |
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| Q |
205 |
attaaaattattaaatgacaattgattgcatcattataaatttgacac-ttgaataacttttaaacatcagagtactagtaataataacattagcaggta |
303 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18190285 |
attaaaattattaaatgacaattgattgcatcgttatacatttgacactttgaataacttttaaacatcagagtactagtaataataacattagcaggta |
18190186 |
T |
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| Q |
304 |
aaacatataggacaattggttttgtgaagttacaaatatatcataactaagaccatagaagacatgcacaggtt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18190185 |
aaacatataggacaattggttttgtgaagttacaaatatatcataactaagaccgtagaagacatgcacaggtt |
18190112 |
T |
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