View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12202_high_1 (Length: 553)

Name: NF12202_high_1
Description: NF12202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12202_high_1
NF12202_high_1
[»] chr7 (2 HSPs)
chr7 (131-535)||(3417067-3417471)
chr7 (11-86)||(3417516-3417591)
[»] chr5 (4 HSPs)
chr5 (134-535)||(12540923-12541327)
chr5 (134-511)||(28385572-28385952)
chr5 (12-79)||(12540801-12540868)
chr5 (9-77)||(28385447-28385515)
[»] chr2 (6 HSPs)
chr2 (134-535)||(13440438-13440842)
chr2 (134-503)||(13448601-13448973)
chr2 (134-430)||(13455072-13455371)
chr2 (12-79)||(13448479-13448546)
chr2 (16-86)||(13454954-13455024)
chr2 (16-86)||(13440320-13440390)
[»] chr6 (4 HSPs)
chr6 (138-451)||(12589787-12590103)
chr6 (134-307)||(12483229-12483402)
chr6 (16-50)||(12590197-12590231)
chr6 (54-86)||(12483450-12483482)
[»] chr4 (8 HSPs)
chr4 (134-469)||(48958385-48958723)
chr4 (134-464)||(48911950-48912283)
chr4 (136-436)||(48974349-48974652)
chr4 (9-77)||(48965442-48965510)
chr4 (345-436)||(48962746-48962837)
chr4 (16-86)||(48958264-48958337)
chr4 (16-86)||(48961413-48961486)
chr4 (154-200)||(48965587-48965633)
[»] scaffold0536 (3 HSPs)
scaffold0536 (134-288)||(6295-6449)
scaffold0536 (164-267)||(1270-1373)
scaffold0536 (346-417)||(6163-6234)
[»] chr8 (2 HSPs)
chr8 (345-428)||(12641122-12641205)
chr8 (165-268)||(12641285-12641388)


Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 131 - 535
Target Start/End: Complemental strand, 3417471 - 3417067
Alignment:
Q  131 caagaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3417471 caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat 3417372  T
Q  231 gtacaacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggtt 330  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3417371 gtacaacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccccacctgatttctctagagtggtt 3417272  T
Q  331 ctccaaatagaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417271 ctccaaatagaagatggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 3417172  T
Q  431 cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa 530  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417171 cgataaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa 3417072  T
Q  531 gtttg 535  Q
    |||||    
T  3417071 gtttg 3417067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 3417591 - 3417516
Alignment:
Q  11 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 134 - 535
Target Start/End: Original strand, 12540923 - 12541327
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||||  | |||||| ||| ||||||||||||||||||||||| ||| ||||||  || | ||||||||||||||||||    
T  12540923 gaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta 12541022  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc 333  Q
    || ||||||||||||||| |||||||||||||| || ||| |||| ||||| ||| |||||||||| |||||||  |||||||||||| || || || ||    
T  12541023 caccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttc 12541122  T
Q  334 caaatagaaga---tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
      |||| ||||   ||||||||||||||||||||||||||| | ||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||    
T  12541123 tgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttga 12541222  T
Q  431 cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa 530  Q
      ||| ||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||||||||||||||||| || |||||||    
T  12541223 taatgtagcctgtacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtgatacgatgaggaaa 12541322  T
Q  531 gtttg 535  Q
     ||||    
T  12541323 atttg 12541327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 134 - 511
Target Start/End: Original strand, 28385572 - 28385952
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  28385572 gaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgta 28385671  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc 333  Q
    ||  |||||||||||| | ||||| ||||||||  |||||||||| ||||| ||| || ||| || |||||||    ||||||||||| ||   ||| |     
T  28385672 cacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgctttctcttgaacagtttta 28385771  T
Q  334 caaata---gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    | ||||   |||| ||||||||||||||||||||||||||| | ||||||||| |||||||  | |||||||||||||||||||||||  ||||||||||    
T  28385772 cgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttga 28385871  T
Q  431 cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcaca 511  Q
     |||| ||||  ||||||||| ||| ||||||||||||| |||||||||  | ||||||||||||||||||||||| ||||    
T  28385872 tgatgtagcctgtacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacaca 28385952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 12540801 - 12540868
Alignment:
Q  12 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 79  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12540801 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcg 12540868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 28385447 - 28385515
Alignment:
Q  9 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 77  Q
    |||||| ||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||    
T  28385447 cagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 28385515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 7e-75; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 134 - 535
Target Start/End: Original strand, 13440438 - 13440842
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13440438 gaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgta 13440537  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc 333  Q
    |||||| ||||||||||  | ||||| ||||||||||| ||| || |||    || || ||||||| |||||||   ||||||||||| || ||||| |     
T  13440538 caacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgctttctcttgaatggtttta 13440637  T
Q  334 caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    | |||   ||||| |||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||    
T  13440638 cgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcagtgaagttgttga 13440737  T
Q  431 cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaa 530  Q
     |||||   | |||||||||| ||||||  ||||||||| |  || |||||| || |  |||||||| ||||| | ||||| ||| ||| || |||||||    
T  13440738 tgatgagtgctttacttttgagcactgtcccaagcatcatttttaggaatttgctaattacctttggcggttttccgcacaaggttatacgatgaggaaa 13440837  T
Q  531 gtttg 535  Q
     ||||    
T  13440838 atttg 13440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 134 - 503
Target Start/End: Original strand, 13448601 - 13448973
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  13448601 gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta 13448700  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc 333  Q
    ||||||||||||||||   | ||| | |||||||||||||| ||| ||| || || |||||||||| |||||||   ||| ||||||| |||  ||| |     
T  13448701 caacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttg 13448800  T
Q  334 caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    | |||   ||||| |||||||||||||||| |||||||||| | || |||||| |||||||| || ||||||||||||||||||||| ||||||||||||    
T  13448801 cgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgttga 13448900  T
Q  431 cgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggttt 503  Q
     ||| |   | |||||||| | ||| || |||||||||| ||| |||||| ||| ||  |||||||| |||||    
T  13448901 tgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggcggttt 13448973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 134 - 430
Target Start/End: Original strand, 13455072 - 13455371
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    |||||||||||||||| || ||||| | |||||||| || |||||| ||||||||||||||||||| |||  |||| || | ||||||||||||||||||    
T  13455072 gaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgta 13455171  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc 333  Q
    ||| ||||||||||||   | |||||  ||||| ||||||||||| ||  || || ||  | ||||||||||||   ||| ||| ||| ||  ||||||     
T  13455172 caatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccctctctgatttttcttgaacggttctg 13455271  T
Q  334 caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    |||||   ||||| |||||||| ||||||| ||||||||||||  ||||| || |||||||| || |||||||||||||||| |||| ||||||||||||    
T  13455272 caaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttga 13455371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 13448479 - 13448546
Alignment:
Q  12 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 79  Q
    ||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||    
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcg 13448546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 13454954 - 13455024
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||||||||||| |||||||||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  13454954 tgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 13440320 - 13440390
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||||||| ||| |||||||||| || | | |||||||||||| || |||||||| | ||||||    
T  13440320 tgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 138 - 451
Target Start/End: Complemental strand, 12590103 - 12589787
Alignment:
Q  138 aacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaac 237  Q
    |||||||| ||||  ||| || |||||||||||  | || | ||||||||| ||||||||||| |||||||||   | ||| ||||| ||||||||||||    
T  12590103 aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac 12590004  T
Q  238 actgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaa 337  Q
    || |||||| || | |  ||||| ||||||||||| ||||| ||| |  || || ||| ||| ||||||| | ||||||||||| ||   ||| |   ||    
T  12590003 acagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaa 12589904  T
Q  338 ta---gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgat 434  Q
    ||   |||| ||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||  ||||||||||||  ||||||||| || ||    
T  12589903 taagagaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaat 12589804  T
Q  435 gaagccattacttttga 451  Q
    ||  |||||||||||||    
T  12589803 gagtccattacttttga 12589787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 307
Target Start/End: Complemental strand, 12483402 - 12483229
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    |||||||||||||||||   | |||||||||||||||| |||||| ||| || || || |||||||||||||||| |   | ||| ||||| ||||||||    
T  12483402 gaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgta 12483303  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccc 307  Q
    ||||||||| ||  |||| | |||||| ||||||||  | ||||||||| | ||| || ||| |||||||||||    
T  12483302 caacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacactctcgtttcccc 12483229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 12590231 - 12590197
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctt 50  Q
    ||||||||||||||||||| |||||||||||||||    
T  12590231 tgtggggcccaacccctaatgatcaaacccttctt 12590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 12483482 - 12483450
Alignment:
Q  54 aatgtttctctcctcaaatcccttcgacaacca 86  Q
    |||||||||||||||||||||||||| ||||||    
T  12483482 aatgtttctctcctcaaatcccttcggcaacca 12483450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 134 - 469
Target Start/End: Original strand, 48958385 - 48958723
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||  |||  |||||| |||||||||||  | || ||||||||||| |||||||||||||| |||||    | ||||||||| ||||||||    
T  48958385 gaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgta 48958484  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc 333  Q
    |||||||||||||  |   |   |||||||||||||||| ||  ||||| ||||  || ||  ||| |||||||   ||| ||||||| || |||||       
T  48958485 caacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctgatttctcttgaatggtttgg 48958584  T
Q  334 caaata---gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    | ||||   ||||  ||||||||||||||| |||||||||| | | ||||||  |||||||  || |||||||| |||||||||||||||||||||||||    
T  48958585 cgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttcaatgaagttgttga 48958684  T
Q  431 cgatgaagccattacttttgaacactgtgtcaagcatca 469  Q
     |||||  || ||||||||||  | ||| ||||||||||    
T  48958685 tgatgagtcccttacttttgaggattgtctcaagcatca 48958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 464
Target Start/End: Complemental strand, 48912283 - 48911950
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    |||||||||||||||||  ||||| ||||||||| ||  |||| ||||||||||| ||||||||||| || ||||       ||||||||| ||||||||    
T  48912283 gaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgta 48912184  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctc 333  Q
    || ||| |||||| ||||||  ||||| ||||||||||  ||||| ||| ||||| || ||| ||| | ||| |   | || |||||| || | |||||     
T  48912183 caccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctcagccttctcttgaatagttctg 48912084  T
Q  334 caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    | |||   ||||| |||||||||||||||||| |||||||  |  |||||||| |||||||  ||| ||||||| || |||||||||   || |||||||    
T  48912083 cgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttga 48911984  T
Q  431 cgatgaagccattacttttgaacactgtgtcaag 464  Q
    | | ||  || ||||||||||| ||||| |||||    
T  48911983 caaggattccgttacttttgaaaactgtctcaag 48911950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 436
Target Start/End: Original strand, 48974349 - 48974652
Alignment:
Q  136 acaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtaca 235  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||| |||| || ||||| |   | ||| || ||||||||||| |    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatggcagaggctcccgaaacatatgtaga 48974448  T
Q  236 acactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtt--tcccccacctgctttctctagagtggttctc 333  Q
     |||||||||   ||| | ||| || |||||||| | |||||||||  |||   ||  || || |||  ||||| | ||||||||||| ||||||| ||     
T  48974449 gcactgagttgggttgctttgaatttagccaacttaagcactcatg--cacgtccactacacttgtttgtcccctatctgctttctcttgagtggtccta 48974546  T
Q  334 caaat---agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 430  Q
    |||||   ||||||||| || | |||||||||    ||||||   ||||||||||| || |  ||  |||||||||||||||| ||| ||||||||||||    
T  48974547 caaatgagagaagatggtcccaaatgccaagctcgatgacctattgttttctcataatgctcgatgtactcttctccatcaagctcagtgaagttgttga 48974646  T
Q  431 cgatga 436  Q
    ||||||    
T  48974647 cgatga 48974652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 48965442 - 48965510
Alignment:
Q  9 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 77  Q
    ||||||||| || |||||||||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 345 - 436
Target Start/End: Original strand, 48962746 - 48962837
Alignment:
Q  345 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatga 436  Q
    |||||| |||||||||||||||||||| | ||||||||| |||||||  || |||||||| || |||||||||  |||||||||||| ||||    
T  48962746 tggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatga 48962837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 48958264 - 48958337
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||| ||||||| |||||||||   ||||||||||||||||||||| || ||||| |||| ||||||    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 48961413 - 48961486
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  154 tgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 200  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 6449 - 6295
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    |||||||||||||||||  ||||||||||||||||||  | ||||||||||| || ||||||||||| | ||||  |   ||||||||||| ||||||||    
T  6449 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 6350  T
Q  234 caacactgagttaacttgttgtgagttgagccaactcaggcactcatgctcactc 288  Q
    ||||||||||||| || | |  ||||  ||||||||||| ||||||||| |||||    
T  6349 caacactgagttatctggcttcgagtctagccaactcagacactcatgcacactc 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 1373 - 1270
Alignment:
Q  164 cttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgag 263  Q
    |||||| ||| | |||||||||||| | ||||||||||| |||||||   ||| ||||||| |||||||| |  ||||||||| || | | |||||||||    
T  1373 cttctagtgcacttgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagttgag 1274  T
Q  264 ccaa 267  Q
    ||||    
T  1273 ccaa 1270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Complemental strand, 6234 - 6163
Alignment:
Q  346 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttca 417  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||||  ||  ||||||| || |||||||||    
T  6234 ggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 428
Target Start/End: Complemental strand, 12641205 - 12641122
Alignment:
Q  345 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgtt 428  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||  || || ||||| |||||||||||||  ||||||||    
T  12641205 tggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt 12641122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 12641388 - 12641285
Alignment:
Q  165 ttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagc 264  Q
    ||||||| |||  |||||||| || ||||||||||||||||||||    | ||| |||||||||||||| |||||||| ||| |||| | ||| ||||||    
T  12641388 ttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagc 12641289  T
Q  265 caac 268  Q
    ||||    
T  12641288 caac 12641285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University