View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12202_high_2 (Length: 214)

Name: NF12202_high_2
Description: NF12202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12202_high_2
NF12202_high_2
[»] scaffold0536 (2 HSPs)
scaffold0536 (14-200)||(6534-6720)
scaffold0536 (20-200)||(10516-10696)
[»] chr4 (6 HSPs)
chr4 (14-200)||(48912368-48912554)
chr4 (20-200)||(48958120-48958300)
chr4 (19-198)||(48965304-48965483)
chr4 (20-200)||(48961267-48961449)
chr4 (14-125)||(48974088-48974199)
chr4 (53-96)||(48951252-48951295)
[»] chr6 (2 HSPs)
chr6 (20-205)||(12590190-12590375)
chr6 (32-198)||(12483492-12483658)
[»] chr2 (3 HSPs)
chr2 (17-199)||(13448336-13448518)
chr2 (35-193)||(13440191-13440349)
chr2 (35-201)||(13454825-13454991)
[»] chr8 (1 HSPs)
chr8 (20-198)||(12641506-12641684)
[»] chr7 (1 HSPs)
chr7 (32-198)||(3417552-3417718)
[»] chr5 (1 HSPs)
chr5 (58-195)||(12540699-12540836)


Alignment Details
Target: scaffold0536 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 6720 - 6534
Alignment:
Q  14 acctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6720 acctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 6621  T
Q  114 cacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6620 cacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 6534  T

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Target: scaffold0536; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 10696 - 10516
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||    
T  10696 gttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaat 10597  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 200  Q
    | |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| |||||||||||||||||||||    
T  10596 gtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttct 10516  T

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Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 48912554 - 48912368
Alignment:
Q  14 acctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 113  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  48912554 acctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacc 48912455  T
Q  114 cacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 200  Q
    ||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | |||||||||    
T  48912454 cacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttct 48912368  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 48958120 - 48958300
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||||||| ||||    
T  48958120 gttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaat 48958219  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 200  Q
    | |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| |||||||    
T  48958220 gtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttct 48958300  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 48965304 - 48965483
Alignment:
Q  19 tgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaa 118  Q
    ||||||||  ||||| ||||| ||||||||||| ||    ||||| || |||||||||||||| |||| ||||||||| || ||||| ||||| ||||||    
T  48965304 tgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttccaaccacaa 48965403  T
Q  119 tgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 198  Q
    || |||||||| |||||||||||   |||||||| ||||| ||| || ||||||||||||||||||||||||||||||||    
T  48965404 tgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacccttctt 48965483  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 48961267 - 48961449
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaa--ttccacccaca 117  Q
    ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| || | |||||||||| |||||||||  |||||   |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  118 atgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 200  Q
    ||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| ||||||||||||||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttct 48961449  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 48974088 - 48974199
Alignment:
Q  14 acctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacc 113  Q
    ||||| ||||||||||| || ||||| ||||||||  | ||||| |||||||||||||| ||||||||||||||||| || || || ||||| |||||||    
T  48974088 acctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttccacc 48974187  T
Q  114 cacaatgcgtca 125  Q
    | ||||| ||||    
T  48974188 cgcaatgtgtca 48974199  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 48951252 - 48951295
Alignment:
Q  53 tgcaccggccacgtgatcatcggaacccctgcactaacagcctc 96  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  48951252 tgcaccggccacgtgatcatcggaacccctacactaatagcctc 48951295  T

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Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 12590375 - 12590190
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||||||| ||||||||||| ||||| || | ||  ||||| |||||||||||||  || |||||||| ||||| ||   ||||||||| |||||||    
T  12590375 gttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaat 12590276  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctctctc 205  Q
    | ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||| ||||    
T  12590275 gtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttctc 12590190  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 12483658 - 12483492
Alignment:
Q  32 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 131  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||| || || |||   |||||||| ||||| || |||||||| |    
T  12483658 tcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatg 12483559  T
Q  132 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 198  Q
    ||||||| ||   ||||||||||||||  || ||||| ||||| ||||| || || |||||| ||||    
T  12483558 cacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatctt 12483492  T

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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 13448336 - 13448518
Alignment:
Q  17 tgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccac 116  Q
    ||||||||||  || |||||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||||||| || || || |||| ||| |    
T  13448336 tgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgc 13448435  T
Q  117 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 199  Q
    |||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||    
T  13448436 aatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc 13448518  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 193
Target Start/End: Original strand, 13440191 - 13440349
Alignment:
Q  35 ttgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcac 134  Q
    ||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||| ||| ||| | || |||| ||| ||||||||||||||  | |    
T  13440191 ttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatcccc 13440290  T
Q  135 ccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaaccc 193  Q
    |||| ||   ||||||||| ||| |||||||||| ||||||||| |||| |||||||||    
T  13440291 ccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaaccc 13440349  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 13454825 - 13454991
Alignment:
Q  35 ttgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcac 134  Q
    ||||| ||||| ||||| || || |||||||| ||||| ||||| ||    ||||||||||| ||  | || |||| ||| ||||||||||||||  | |    
T  13454825 ttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatcccc 13454924  T
Q  135 ccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctc 201  Q
    |||| ||   ||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| |||||    
T  13454925 ccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctc 13454991  T

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Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 12641684 - 12641506
Alignment:
Q  20 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 119  Q
    ||||||| ||| ||||| || || |||||||| ||||| |||||||||||||| |||| |||||||||||||||||| ||   ||| ||| |||| ||||    
T  12641684 gttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaat 12641585  T
Q  120 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 198  Q
    ||||||| || |||||||||||   |||||| |||||||| |||||||| |||||  ||||||| || ||||| |||||    
T  12641584 gcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttctt 12641506  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 3417718 - 3417552
Alignment:
Q  32 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 131  Q
    |||||| | ||||| ||||| ||  |||||||||| ||||| ||||| ||||||| |||||||||||||   || |||| ||||||||| ||||||||      
T  3417718 tcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatc 3417619  T
Q  132 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 198  Q
    | || || ||   ||||||||| |||  ||| ||||| |||||||||||||  ||||||||||||||    
T  3417618 cccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctt 3417552  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 12540699 - 12540836
Alignment:
Q  58 cggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatc 157  Q
    ||||||||| ||||| ||||| || |||| ||||||||| ||| | || || | ||||||||| ||||||||  | ||||| ||   ||||||||| |||    
T  12540699 cggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc 12540798  T
Q  158 ataacttgtggagcccaacccctaataatcaaaccctt 195  Q
     |||| ||||| |||||||||||||| |||||||||||    
T  12540799 ttaacctgtggggcccaacccctaatgatcaaaccctt 12540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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