View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_high_1 (Length: 697)
Name: NF12203_high_1
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 19 - 684
Target Start/End: Complemental strand, 46098476 - 46097811
Alignment:
| Q |
19 |
agtgtttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcaga |
118 |
Q |
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| T |
46098476 |
agtgtttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcaga |
46098377 |
T |
|
| Q |
119 |
agcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttccccaagtgatcaatgatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46098376 |
agcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttccccaagtgatcaatgatt |
46098277 |
T |
|
| Q |
219 |
cgannnnnnncctccttgtccataccgaccagggcagctaagtaaacaatctcatagtctttcaaatcatttgacacatccaatatatcattggtgtgaa |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46098276 |
cgatttttttcctccttgtccataccgaccagggcagctaagtaaacaatttcatagtctttcaaatcatttgacacgtccaatatatcattggtgtgaa |
46098177 |
T |
|
| Q |
319 |
aaaccatacggtttgacaagtcaggatcagatgaaaccaagtgcttagcacttgaattggctaaagggtcgatgtcgtagttgtgaaaagtggttgaagg |
418 |
Q |
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| T |
46098176 |
aaaccatacggtttgacaagtcaggatcagatgaaaccaagtgcttagcacttgaattggctaaagggtcgatgtcgtagttgtgaaaagtggttgaagg |
46098077 |
T |
|
| Q |
419 |
taagtggttcgatgccaagacaattgaagtaaggggaaggggtcccgaaccaataaaagcaattttgttagggacatgagtgcagtgttggctaaggata |
518 |
Q |
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| T |
46098076 |
taagtggttccatgccaagacaattgaagtaaggggaaggggtcccgaaccaataaaagcaattttgttagggacatgagtgcagtgttggctaaggata |
46097977 |
T |
|
| Q |
519 |
gaaaactcaaggtgaccaagtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46097976 |
gaaaactcaaggtgaccaagtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagt |
46097877 |
T |
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| Q |
619 |
gtctctccaaatacccttcagcttcaccacatagccttataagatgggatctttttccttgcacag |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46097876 |
gtctctccaaatacccttcagcttcaccacatagccttataagatgggatctttttccttgcacag |
46097811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 29 - 658
Target Start/End: Complemental strand, 37485230 - 37484601
Alignment:
| Q |
29 |
cataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcagaagcttcaacc |
128 |
Q |
| |
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|||||||||| | |||| |||||||| |||||||||||||||||| | ||||| || || ||||| ||||||||||||||||||||| | ||||| |
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| T |
37485230 |
cataggatacctgcgcgctatgacaactgaattgataacctcgtccgttggatgaaacaccgagagcacctcaaagcctcgaagatcattggtatcaaca |
37485131 |
T |
|
| Q |
129 |
actggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttccccaagtgatcaatgattcgannnnnnn |
228 |
Q |
| |
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|| ||||| | ||||||||| || |||||||||||||| | ||| || ||||||||||| ||||||| ||| |||| || |||||||| | | |
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| T |
37485130 |
accggatacaaaaaagcacgcgcaccgtgagcactcctgagcatcaggagtgctcctggtgccatgtacttagccaaatgctcaatgatcctattctttt |
37485031 |
T |
|
| Q |
229 |
cctccttgtccataccgaccagggcagctaagtaaacaatctcatagtctttcaaatcatttgacacatccaatatatcattggtgtgaaaaaccatacg |
328 |
Q |
| |
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|||| ||| || || || || || || ||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
37485030 |
cctcaacactcattcccacaagtgctgccaaataaacaacttcatattctttcaaagcatttgaaacatccaatatatcattggtgtaaaaaaacatacg |
37484931 |
T |
|
| Q |
329 |
gtttgacaagtcaggatcagatgaaaccaagtgcttagcacttgaattggctaaagggtcgatgtcgtagttgtgaaaagtggttgaaggtaagtggttc |
428 |
Q |
| |
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||||| || ||||||||||| ||||||||| ||| | ||||||||||||||||| | ||| |||||||||||| | || ||| ||| || |
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| T |
37484930 |
ctttgataattcaggatcagaggaaaccaagcaagaagctttggaattggctaaagggtcaaagtcatagttgtgaaaaattgtgttttgtaggtgatta |
37484831 |
T |
|
| Q |
429 |
gatgccaagacaattgaagtaaggggaaggggtcccgaaccaataaaagcaattttgttagggacatgagtgcagtgttggctaaggatagaaaactcaa |
528 |
Q |
| |
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| || || |||| ||||||||| ||||| || || || |||||||| |||||||| ||||| |||| |||| |||||| | | | |||| || |||| |
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| T |
37484830 |
gtggctaacacaagtgaagtaagtggaagtggacctgagccaataaaggcaatttttttaggaacattagtggagtgtttggttaagatattgaattcaa |
37484731 |
T |
|
| Q |
529 |
ggtgaccaagtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagtgtctctccaa |
628 |
Q |
| |
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|| ||| |||||||| |||||||||||||||||||||||| | ||| ||||| || || || | |||||| ||| ||| | ||| ||||| || || || |
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| T |
37484730 |
ggagactaagtttgaggtagtttgaataataagggaaaatgttgagttgattgagtggattattgtatgaagctatgatagttgagtagtgactttctaa |
37484631 |
T |
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| Q |
629 |
atacccttcagcttcaccacatagccttat |
658 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
37484630 |
atggccttcagcttcaccacatagccttat |
37484601 |
T |
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