View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_high_10 (Length: 335)
Name: NF12203_high_10
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 44112847 - 44112526
Alignment:
| Q |
1 |
tccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagtggtgagacccccagaaaatttgtt |
100 |
Q |
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| T |
44112847 |
tccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagtggtgagacccccagaaaatttgtt |
44112748 |
T |
|
| Q |
101 |
aagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaaacactacagagctgatgttgctacgctccaaagc |
200 |
Q |
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| T |
44112747 |
aagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaaacactacagagctgatgttgctacgctccaaagc |
44112648 |
T |
|
| Q |
201 |
ttctttcagtggcattcctcttgcaacttat-attaatcatatgatatgatgatttctatttgttaatgttgccattactattttttacttcactttagg |
299 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44112647 |
ttctttcagtggcattcctcttgcaacttataattaatcatatgatatgatgatttctatttgttaatgttgccattactattttttacttcactttagg |
44112548 |
T |
|
| Q |
300 |
cgttatttccttccacaggttc |
321 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
44112547 |
cgttatttccttccacatgttc |
44112526 |
T |
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