View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12203_high_11 (Length: 330)
Name: NF12203_high_11
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 42313556 - 42313855
Alignment:
| Q |
15 |
cagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattctttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313556 |
cagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattctttc |
42313655 |
T |
|
| Q |
115 |
taactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313656 |
taactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgt |
42313755 |
T |
|
| Q |
215 |
gacacaataggccatggttctcacactctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313756 |
gacacaataggccatggttctcacactctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtg |
42313855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 31108871 - 31108828
Alignment:
| Q |
224 |
ggccatggttctcacactctatcaacagctggtggtaatttcgt |
267 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
31108871 |
ggccatggtactcacacactatcaacagctggtggaaatttcgt |
31108828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University