View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_high_14 (Length: 269)
Name: NF12203_high_14
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 5917912 - 5917654
Alignment:
| Q |
17 |
atatagatgaccactttatatgatacaaatagaagaaggttgcatagagaataaatgttggtcaaggtcaacttccttca-------------------t |
97 |
Q |
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| T |
5917912 |
atatagatgaccactttatatgatacaaatagaagaaggttgcatagagaataaatgttggtcaaggtcaacttccttcacacccaatcaacacacattt |
5917813 |
T |
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| Q |
98 |
ggaaattattttgagcattagcattaaaatgaaatattttgcaaaacaatgaacatctaaattgagctgtttttcaattctgtacattagtattctgaac |
197 |
Q |
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| T |
5917812 |
ggaaattattttgagcattagcattaaaatgaaatattttgcaaaacaatgaacatctaaattgagctgtttttcaattatgtacattagtattctgaac |
5917713 |
T |
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| Q |
198 |
atgtttatatgataagtgatttcttcatagatccagtatatatgtagaggaaagagcac |
256 |
Q |
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| T |
5917712 |
atgtttatatgataagtgatttcttcatagatccagtatatatgtagaggaaagagcac |
5917654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 5926917 - 5926829
Alignment:
| Q |
108 |
ttgagcattagcattaaaatgaaatattttgcaaaacaatgaacatctaaattgagctgtttttcaattctgtacattagtattctgaa |
196 |
Q |
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| T |
5926917 |
ttgagcattagcattaaaacgaagttttctgcaaaacaatgaacatctaaattgagcagtttttcaattctgtacatcagtattctgaa |
5926829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 5927018 - 5926956
Alignment:
| Q |
18 |
tatagatgaccactttatatgatacaaatagaagaaggttgcatagagaataaatgttggtca |
80 |
Q |
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| T |
5927018 |
tatagatgaccactttatatgatacaaatagaggaaggttgcacagagaataaatattggtca |
5926956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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