View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_high_3 (Length: 583)
Name: NF12203_high_3
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 33024299 - 33023787
Alignment:
| Q |
18 |
gtggcgccaaacacgaagagatctgaaaatgggtggtgtagagagaaaaatattgtcgttgcaccacaacatgcgactgttacatcttgaaggttaatgg |
117 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||| ||||||| ||| ||||||||||||||||| |||| |
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| T |
33024299 |
gtggcgccaaacacgaagagatctagaaaggggtggtgtagagagaaaattcttgtcgttgcaccgcaacatgtgaccgttacatcttgaaggttgatgg |
33024200 |
T |
|
| Q |
118 |
tttggataattagtgctaaggtggcgtataaaattttatctattgaagtatttattgtagatagacaaaataacaataaacattgaaaactcacacacat |
217 |
Q |
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|||||||||||||| ||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33024199 |
tttggataattagttctagggtggcgtttaaaattttatccattgaagtttttattgtagatagacaaaataacaataaacattgaaaactcacaca--t |
33024102 |
T |
|
| Q |
218 |
aattggaggatctgagactcaaaactcagttattgcatccaaccgatcaatttcaacatttttgccggcaatatatcgacatggatatcatattatcttt |
317 |
Q |
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||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
33024101 |
aattggaggat-tgagactcaaaactcagttaatgcatctaaccgatcaatttcaacatttttgccgacaatatattgacatggatatcatattatcttt |
33024003 |
T |
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| Q |
318 |
gtatctagtagaattagagtcggtatatccaattatctcaatacgatgtgacctttgatagatatgtgagcatgatgcgacttaggtccattttcacaat |
417 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33024002 |
gtatctagtaaaattagagtcggtatatccaattatctcaacacgatgtgacctttgatagatatgtgagcatgatgcgacttaggtccattttcacaat |
33023903 |
T |
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| Q |
418 |
ggaatataacc-nnnnnnnnnaccgaaaaattggaatataacttaaacttacataggttggtattcttacataaatgtatacttagaattagattgattg |
516 |
Q |
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||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33023902 |
ggaatataaccttttttttttaccgaacaa-tggaatataacttaaacttacataggttggtattcttacataaatgtatacttagaattagattgattg |
33023804 |
T |
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| Q |
517 |
tgttgggtacatgttca |
533 |
Q |
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|||||||||||||||| |
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| T |
33023803 |
cgttgggtacatgttca |
33023787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 7978506 - 7978550
Alignment:
| Q |
175 |
tagatagacaaaataacaataaacattgaaaactcacacacataa |
219 |
Q |
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| T |
7978506 |
tagatagacaaaataacaataattattgaaaactcacatacataa |
7978550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 39111976 - 39112031
Alignment:
| Q |
172 |
ttgtagatagacaaaataacaataaacattgaaaactcacacacataattggagga |
227 |
Q |
| |
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|||| |||||||||||| ||||||| |||||||| || |||||||||| ||||||| |
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| T |
39111976 |
ttgttgatagacaaaatgacaataatcattgaaagcttacacacataaatggagga |
39112031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 23279923 - 23279884
Alignment:
| Q |
175 |
tagatagacaaaataacaataaacattgaaaactcacaca |
214 |
Q |
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| T |
23279923 |
tagatagacaaaataagaataagcattgaaaactcacaca |
23279884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 16964298 - 16964261
Alignment:
| Q |
182 |
acaaaataacaataaacattgaaaactcacacacataa |
219 |
Q |
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| T |
16964298 |
acaaaataacaataatcattgaaaattcacacacataa |
16964261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 30335213 - 30335246
Alignment:
| Q |
394 |
gcgacttaggtccattttcacaatggaatataac |
427 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
30335213 |
gcgacataggtccattttcacaatggaatataac |
30335246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 30335236 - 30335311
Alignment:
| Q |
448 |
tggaatataacttaaacttacataggttggtattcttacataaatgtatacttagaa--ttagattgattgtgttg |
521 |
Q |
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|||||||||||| |||||||| ||||||||||||||| | |||| |||| || ||| |||||||||| |||||| |
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| T |
30335236 |
tggaatataactggaacttacagaggttggtattcttatagaaatctatattttgaattttagattgatcgtgttg |
30335311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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